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PLM3_60_coex_sep16_scaffold_1066

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1066_1
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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28..1059
DNA (1032bp) protein (344aa)
Anti-sigma regulatory factor (Ser/Thr protein kinase) Tax=Microcoleus sp. PCC 7113 RepID=K9WIR1_9CYAN
anti-sigma regulatory factor
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:AFZ19691.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
PLM3_60_coex_sep16_scaffold_1066_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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1056..3185
DNA (2130bp) protein (710aa)
Histidine kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02BM7_SOLUE
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ABJ81539.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_60_coex_sep16_scaffold_1066_3
unknown

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comp(3244..3444)
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1066_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3588..5078
DNA (1491bp) protein (497aa)
PAS domain S-box Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8I1_SINAD
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA25175.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM3_60_coex_sep16_scaffold_1066_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5117..5488
DNA (372bp) protein (124aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1066_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5490..5675
DNA (186bp) protein (62aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1066_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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5680..6495
DNA (816bp) protein (272aa)
Periplasmic binding protein bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1066_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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6488..7639
DNA (1152bp) protein (384aa)
hypothetical protein bin=bin7_NC10_sister species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_1066_9
R_NC10_66_22, NC10, Bacteria

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7648..8778
DNA (1131bp) protein (377aa)
Putative Peptidase, family M48 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative peptidase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_60_coex_sep16_scaffold_1066_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(8884..11256)
DNA (2373bp) protein (791aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1066_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(11267..11419)
DNA (153bp) protein (51aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1066_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(11446..12636)
DNA (1191bp) protein (397aa)
Multi-sensor hybrid histidine kinase bin=GWC2_Methylomirabilis_70_24 species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative two-component hybrid sensor and regulator
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_1066_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(12686..13150)
DNA (465bp) protein (155aa)
Endoribonuclease L-PSP bin=GWA2_Methylomirabilis_73_35 species=Flavobacteria bacterium MS024-2A genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1066_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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13298..14002
DNA (705bp) protein (235aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes bin=GWA2_Methylomirabilis_73_35 species=uncultured gamma proteobacterium HF4000_19M20 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1066_15
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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14089..14475
DNA (387bp) protein (129aa)
Putative Histidine kinase bin=GWC2_Chloroflexi_73_18 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PAS sensor protein
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_1066_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(14478..15710)
DNA (1233bp) protein (411aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_1066_17
Pseudomonas sp. GM102, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15873..16367)
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Pseudomonas sp. GM102 RepID=J3E8P2_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM07345.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM102.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1066_18
Pseudomonas sp. GM102, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16367..16726)
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Pseudomonas sp. GM102 RepID=J2N9J3_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM07344.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM102.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1066_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(16738..17769)
DNA (1032bp) protein (344aa)
alcohol dehydrogenase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_1066_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(17766..18785)
DNA (1020bp) protein (340aa)
Luciferase family protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1066_21
unknown

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18853..19173
DNA (321bp) protein (107aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1066_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(19254..19805)
DNA (552bp) protein (184aa)
hypothetical protein bin=bin7_NC10_sister species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_1066_23
unknown

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comp(19831..20331)
DNA (501bp) protein (167aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1066_24
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

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comp(20401..20907)
DNA (507bp) protein (169aa)
Putative uncharacterized protein Tax=Xanthomonas perforans 91-118 RepID=F0BND9_9XANT
Tax=GWF2_Lentisphaerae_44_16_curated
Displaying 24 items

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