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PLM3_60_coex_sep16_scaffold_1647

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1647_1
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121..261
DNA (141bp) protein (47aa)
4-carboxymuconolactone decarboxylase bin=GWC2_Methylomirabilis_70_16 species=Azospirillum sp. genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_60_coex_sep16_scaffold_1647_2
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(350..844)
DNA (495bp) protein (165aa)
Peptidoglycan-binding domain 1 protein bin=GWB2_CP_45_9 species=Marinobacter hydrocarbonoclasticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
plasma membrane H+-transporting two-sector ATPase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_60_coex_sep16_scaffold_1647_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(952..1410)
DNA (459bp) protein (153aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1647_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1421..3034)
DNA (1614bp) protein (538aa)
AMP-dependent synthetase and ligase bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1647_5
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3229..3960
DNA (732bp) protein (244aa)
metal-chelation protein CHAD Tax=Saccharopolyspora spinosa RepID=UPI00023797D6
CHAD domain containing protein {ECO:0000313|EMBL:CAM00344.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
CHAD domain-containing protein
PLM3_60_coex_sep16_scaffold_1647_6
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(3968..4375)
DNA (408bp) protein (136aa)
NUDIX hydrolase Tax=Patulibacter medicamentivorans RepID=H0E3C1_9ACTN
NUDIX hydrolase {ECO:0000313|EMBL:EHN11830.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
fructose-2,6-bisphosphatase
PLM3_60_coex_sep16_scaffold_1647_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4410..5942)
DNA (1533bp) protein (511aa)
Glycosyl transferase, group 2 family protein bin=GWA2_Methylomirabilis_73_35 species=Labrenzia alexandrii genus=Labrenzia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1647_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5949..6242)
DNA (294bp) protein (98aa)
Septum formation initiator family protein bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
divIC; septum formation initiator family protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1647_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6239..7528)
DNA (1290bp) protein (430aa)
enolase (EC:4.2.1.11)
Enolase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1647_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7531..8430)
DNA (900bp) protein (300aa)
farnesyl-diphosphate synthase (EC:2.5.1.10 2.5.1.1 2.5.1.29)
Polyprenyl synthetase bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1647_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8427..8666)
DNA (240bp) protein (80aa)
Exodeoxyribonuclease 7 small subunit bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exodeoxyribonuclease VII small subunit
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1647_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8647..10002)
DNA (1356bp) protein (452aa)
exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] bin=bin7_NC10_sister species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
exodeoxyribonuclease VII large subunit
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1647_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9999..10850)
DNA (852bp) protein (284aa)
Methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1647_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10881..11657)
DNA (777bp) protein (259aa)
Metallophosphoesterase bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metallophosphoesterase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1647_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11676..12830)
DNA (1155bp) protein (385aa)
Ribonuclease Y bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
HAD superfamily hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1647_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12788..13282)
DNA (495bp) protein (165aa)
Ribonuclease Y bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1647_17
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13599..13871
DNA (273bp) protein (91aa)
Possible type I phosphodiesterase Tax=Planctomyces maris DSM 8797 RepID=A6CFW3_9PLAN
Possible type I phosphodiesterase {ECO:0000313|EMBL:EDL56423.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
type I phosphodiesterase/nucleotide pyrophosphatase
PLM3_60_coex_sep16_scaffold_1647_18
Paenibacillus sabinae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13883..14644
DNA (762bp) protein (254aa)
Possible type I phosphodiesterase Tax=Planctomyces maris DSM 8797 RepID=A6CFW3_9PLAN
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:AHV99632.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sabinae T27.;"
PLM3_60_coex_sep16_scaffold_1647_19
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(14730..15248)
DNA (519bp) protein (173aa)
GCN5-related N-acetyltransferase Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HRS7_CYAP4
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACL45944.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
PLM3_60_coex_sep16_scaffold_1647_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15307..15609)
DNA (303bp) protein (101aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cell division protein ZapA
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1647_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15612..15815)
DNA (204bp) protein (68aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1647_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15822..16148)
DNA (327bp) protein (109aa)
pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 22 items

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