ggKbase home page

PLM3_60_coex_sep16_scaffold_1690

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1690_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..241)
DNA (240bp) protein (80aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1690_2
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(394..1176)
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9P739_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KFE71218.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1690_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1241..1549)
DNA (309bp) protein (103aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1690_4
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1583..1963)
DNA (381bp) protein (127aa)
Response regulator receiver protein Tax=Thiorhodococcus drewsii AZ1 RepID=G2E0H2_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EGV31900.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
PLM3_60_coex_sep16_scaffold_1690_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2045..2920
DNA (876bp) protein (292aa)
phosphonate ABC transporter substrate-binding protein; K02044 phosphonate transport system substrate-binding protein bin=bin7_NC10_sister species=Sulfitobacter sp. NAS-14.1 genus=Sulfitobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
phosphonate ABC transporter phosphate-binding periplasmic component
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1690_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2958..3698
DNA (741bp) protein (247aa)
phosphonate ABC transporter ATPase; K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28] bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phnC; PhnC protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1690_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3695..4435
DNA (741bp) protein (247aa)
phosphonate ABC transporter permease; K02042 phosphonate transport system permease protein bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phosphonate ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1690_8
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4681..6183
DNA (1503bp) protein (501aa)
Amidohydrolase 2 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS74_PARL1
amidohydrolase 2
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_60_coex_sep16_scaffold_1690_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6269..7543
DNA (1275bp) protein (425aa)
Beta-lactamase Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VXA2_9BURK
Beta-lactamase {ECO:0000313|EMBL:KJB93805.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Beta-lactamase class C and other penicillin binding protein
PLM3_60_coex_sep16_scaffold_1690_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7561..8934)
DNA (1374bp) protein (458aa)
Putative oxidoreductase bin=GWC2_Methylomirabilis_70_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative oxidoreductase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_1690_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9011..9397
DNA (387bp) protein (129aa)
Endoribonuclease L-PSP bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
deaminase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1690_12

Not on your lists

comp(9407..10438)
DNA (1032bp) protein (344aa)
Luciferase-like, subgroup Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TD21_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKK95377.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
FMN-dependent monooxygenase
PLM3_60_coex_sep16_scaffold_1690_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10438..10959)
DNA (522bp) protein (174aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_1690_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11108..12475
DNA (1368bp) protein (456aa)
Aminotransferase, class III bin=GWA2_Methylomirabilis_73_35 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
class III aminotransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1690_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12638..13108
DNA (471bp) protein (157aa)
LmbE family protein bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LmbE family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1690_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13151..13537
DNA (387bp) protein (129aa)
Restriction endonuclease-like protein Tax=Anaeromyxobacter sp. (strain K) RepID=B4UFQ3_ANASK
restriction endonuclease-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_60_coex_sep16_scaffold_1690_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13931..15160
DNA (1230bp) protein (410aa)
HNH endonuclease bin=GWC2_Methylomirabilis_70_16 species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
HNH endonuclease
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_1690_18
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(15176..15577)
DNA (402bp) protein (134aa)
Putative oxidoreductase Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZXC1_9ACTN
putative oxidoreductase
Tax=RBG_16_Chloroflexi_68_14_curated
Displaying 18 items

View Taxonomy