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PLM3_60_coex_sep16_scaffold_1981

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1981_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3..1034)
DNA (1032bp) protein (344aa)
Acyl-CoA dehydrogenase-like protein bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1981_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1051..2430)
DNA (1380bp) protein (460aa)
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1981_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(2430..3743)
DNA (1314bp) protein (438aa)
pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (EC:2.3.1.12) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (EC:2.3.1.12)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1981_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3743..4726)
DNA (984bp) protein (328aa)
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1)
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_1981_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4737..5774)
DNA (1038bp) protein (346aa)
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1981_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(6046..6360)
DNA (315bp) protein (105aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] bin=bin7_NC10_sister species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
nuoK; NADH-quinone oxidoreductase subunit K (NADH dehydrogenase I, chain K) (NDH-1, chain K) (EC:1.6.5.3 1.6.99.5)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1981_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(6357..6851)
DNA (495bp) protein (165aa)
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase subunit J
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1981_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6851..7390)
DNA (540bp) protein (180aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1981_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7387..8499)
DNA (1113bp) protein (371aa)
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase subunit 1
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1981_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8496..10136)
DNA (1641bp) protein (547aa)
NADH dehydrogenase I, G subunit (75 kDa) bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Molybdopterin oxidoreductase Fe4S4 region
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_1981_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10138..11358)
DNA (1221bp) protein (407aa)
NADH dehydrogenase I subunit F bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NADH-quinone oxidoreductase subunit F
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_1981_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11358..11564)
DNA (207bp) protein (69aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] bin=bin7_NC10_sister species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase I, E subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 12 items

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