ggKbase home page

PLM3_60_coex_sep16_scaffold_780

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_780_1
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

114..1082
DNA (969bp) protein (323aa)
Binding-protein-dependent transport systems inner membrane component Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C870_SPHTD
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ40013.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_60_coex_sep16_scaffold_780_2
Virgibacillus sp. Vm-5, Virgibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1079..1918
DNA (840bp) protein (280aa)
Uncharacterized protein Tax=Virgibacillus sp. CM-4 RepID=T0JBK0_9BACI
Glutathione transport system permease protein GsiD {ECO:0000313|EMBL:CDQ38110.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Virgibacillus.;" source="Virgibacillus sp. Vm-5.;"
dppC9; peptide ABC transporter permease
PLM3_60_coex_sep16_scaffold_780_3

Not on your lists

1947..3575
DNA (1629bp) protein (543aa)
4-phytase (EC:3.1.3.26)
Oligopeptide-binding protein bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KKM73975.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_60_coex_sep16_scaffold_780_4
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3579..4415)
DNA (837bp) protein (279aa)
Proline iminopeptidase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6NZ45_9FIRM
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EKP94135.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
alpha/beta hydrolase fold protein
PLM3_60_coex_sep16_scaffold_780_5
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4422..5327)
DNA (906bp) protein (302aa)
Binding-protein-dependent transport systems inner membrane component Tax=Thermincola potens (strain JR) RepID=D5XE90_THEPJ
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADG81961.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
PLM3_60_coex_sep16_scaffold_780_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5332..6282)
DNA (951bp) protein (317aa)
Binding-protein-dependent transport system inner membrane protein Tax=Nitratireductor aquibiodomus RA22 RepID=I5C8R9_9RHIZ
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:EIM78221.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
binding-protein-dependent transport system inner membrane protein
PLM3_60_coex_sep16_scaffold_780_7
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(6279..7838)
DNA (1560bp) protein (520aa)
Heme-binding protein A (Hemin-binding lipoprotein) Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4I5_THERP
heme-binding protein A (Hemin-binding lipoprotein)
Heme-binding protein A (Hemin-binding lipoprotein) {ECO:0000313|EMBL:ACM07225.1}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
PLM3_60_coex_sep16_scaffold_780_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7882..9078)
DNA (1197bp) protein (399aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase protein Tax=Salinisphaera shabanensis E1L3A RepID=U2FTE3_9GAMM
methionine synthase II (cobalamin-independent)-like protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_780_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9155..9487
DNA (333bp) protein (111aa)
Thioredoxin bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thioredoxin
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_780_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9496..10380)
DNA (885bp) protein (295aa)
ABC transporter permease protein bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Dipeptide transport system permease protein DppC
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_780_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10383..11324)
DNA (942bp) protein (314aa)
ABC transporter permease protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_780_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11340..12935)
DNA (1596bp) protein (532aa)
Extracellular solute-binding protein family 5 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular solute-binding protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_780_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13175..13495
DNA (321bp) protein (107aa)
RNP-1 like RNA-binding protein bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RRM domain-containing RNA-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_780_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(13565..13783)
DNA (219bp) protein (73aa)
Zinc finger, CDGSH-type bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
Zinc finger, CDGSH-type
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_780_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13847..15214
DNA (1368bp) protein (456aa)
Radical SAM domain protein bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
radical SAM domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_780_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15298..15579
DNA (282bp) protein (94aa)
Nitrogen fixation protein NifU bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thioredoxin-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_780_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15611..16840
DNA (1230bp) protein (410aa)
biotin carboxylase-like bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
biotin carboxylase-like
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_780_18
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16916..17977
DNA (1062bp) protein (354aa)
Putative signal transduction histidine kinase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SGW8_RHOMR
putative signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Displaying 18 items

View Taxonomy