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PLM3_60_coex_sep16_scaffold_973

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_973_1
unknown

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2..436
DNA (435bp) protein (145aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_973_2
unknown

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560..847
DNA (288bp) protein (96aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_973_3
unknown

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844..1065
DNA (222bp) protein (74aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_973_4
unknown

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1150..1296
DNA (147bp) protein (49aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_973_5
Clostridium sp. CAG:568, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1443..1685
DNA (243bp) protein (81aa)
tyrosine recombinase XerC Tax=[Streptococcus] pleomorphus RepID=UPI0003B3DA48
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:568.;"
xerC; tyrosine integrase/recombinase
PLM3_60_coex_sep16_scaffold_973_6
unknown

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1691..1912
DNA (222bp) protein (74aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_973_7
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1878..2612
DNA (735bp) protein (245aa)
Phage integrase family protein Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUR8_9AQUI
phage integrase family site specific recombinase
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM3_60_coex_sep16_scaffold_973_8
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2591..2800
DNA (210bp) protein (70aa)
Site-specific recombinase, phage integrase family protein Tax=Salmonella enterica subsp. enterica serovar Anatum str. ATCC BAA-1592 RepID=V2HPV3_SALAN
Integrase {ECO:0000313|EMBL:ETC64153.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Enteritidis str. 3402.;"
phage integrase family protein
PLM3_60_coex_sep16_scaffold_973_trna_1
unknown

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2834..2905
DNA (72bp)
transferRNA Cys
PLM3_60_coex_sep16_scaffold_973_trna_2
unknown

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2923..3006
DNA (84bp)
transferRNA Leu
PLM3_60_coex_sep16_scaffold_973_9
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3031..3840)
DNA (810bp) protein (270aa)
ribonuclease Z (EC:3.1.26.11) bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
rnz; ribonuclease Z (EC:3.1.26.11)
PLM3_60_coex_sep16_scaffold_973_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3891..4685
DNA (795bp) protein (265aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_973_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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4773..6113
DNA (1341bp) protein (447aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_973_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6152..7855
DNA (1704bp) protein (568aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_973_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7855..8880
DNA (1026bp) protein (342aa)
Molybdenum cofactor biosynthesis protein A bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moaA; molybdenum cofactor biosynthesis protein A
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_973_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8883..9593
DNA (711bp) protein (237aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_973_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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9651..10076
DNA (426bp) protein (142aa)
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin7_NC10_sister organism_group=NC10
nitroreductase
Tax=CSP1_6_Rokubacteria
PLM3_60_coex_sep16_scaffold_973_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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10111..11268
DNA (1158bp) protein (386aa)
id=4695023 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_973_17
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11329..12777
DNA (1449bp) protein (483aa)
Putative uncharacterized protein bin=GWC2_Syntrophus__56_31 species=Bacillus clausii genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
anion transporter
Tax=GWC2_Syntrophus_56_31_curated
PLM3_60_coex_sep16_scaffold_973_18
unknown

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12799..13197
DNA (399bp) protein (133aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_973_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13194..14642)
DNA (1449bp) protein (483aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_973_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14647..16137)
DNA (1491bp) protein (497aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_973_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16167..19226)
DNA (3060bp) protein (1020aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_973_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

19311..20243
DNA (933bp) protein (311aa)
LysR substrate-binding protein bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_973_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20263..20787
DNA (525bp) protein (175aa)
Hypothetical conserved protein bin=GWA2_Methylomirabilis_73_35 species=uncultured alpha proteobacterium genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_coex_sep16_scaffold_973_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20993..22678
DNA (1686bp) protein (562aa)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_973_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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22692..23729
DNA (1038bp) protein (346aa)
2-oxoglutarate synthase (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit beta bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_973_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23986..25431
DNA (1446bp) protein (482aa)
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15)
Glycolate oxidase, subunit GlcD bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_973_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25428..26735
DNA (1308bp) protein (436aa)
FAD linked oxidase-like protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD linked oxidase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_973_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26818..27252
DNA (435bp) protein (145aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 30 items

View Taxonomy