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PLM3_60_coex_sep16_scaffold_7268

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_7268_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2..346
DNA (345bp) protein (115aa)
Nitrogen regulatory protein P-II 1 bin=GWA2_Methylomirabilis_73_35 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrogen regulatory protein P-II
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_7268_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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362..1834
DNA (1473bp) protein (491aa)
Ammonium transport protein (Amt family) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amtB; ammonium transport protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_7268_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1945..3390
DNA (1446bp) protein (482aa)
Glutamine synthetase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GlnA; glutamine synthetase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_7268_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3534..4133
DNA (600bp) protein (200aa)
Response regulator receiver bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Response regulator receiver
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_7268_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4295..5161
DNA (867bp) protein (289aa)
Twin-arginine translocation pathway signal (Fragment) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
urea/short-chain amide-binding signal peptide protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_7268_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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5137..5544
DNA (408bp) protein (136aa)
Twin-arginine translocation pathway signal (Fragment) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
livG; branched-chain amino acid ABC transporter periplasmic protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_7268_7
unknown

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5544..5648
DNA (105bp) protein (35aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_7268_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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5650..7095
DNA (1446bp) protein (482aa)
Branched-chain amino acid transport system, permease component bin=GWA2_Methylomirabilis_73_35 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livH5; branched-chain amino acid ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_7268_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7082..8323
DNA (1242bp) protein (414aa)
Urea ABC transporter, permease protein UrtC bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livM; branched chain amino acid ABC transporter permease
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_7268_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8320..9099
DNA (780bp) protein (260aa)
urtD; ABC-type high affinity urea uptake system ATPase component UrtD (EC:3.6.3.-)
Urea ABC transporter, ATP-binding protein UrtD bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_7268_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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9104..9814
DNA (711bp) protein (237aa)
Urea ABC transporter, ATP-binding protein UrtE bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
urea ABC transporter ATP-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_7268_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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9856..10158
DNA (303bp) protein (101aa)
urease subunit gamma (EC:3.5.1.5); K01430 urease subunit gamma [EC:3.5.1.5] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
urease subunit gamma
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_7268_13
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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10163..10708
DNA (546bp) protein (182aa)
GCN5-related N-acetyltransferase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NRE0_ROSCS
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABU60136.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_7268_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10705..11049
DNA (345bp) protein (115aa)
urease subunit beta (EC:3.5.1.5)
Urease subunit beta bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 14 items

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