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PLM3_60_coex_sep16_scaffold_4253

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_4253_1
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..282)
DNA (282bp) protein (94aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037B649B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH97721.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_60_coex_sep16_scaffold_4253_2
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(287..1258)
DNA (972bp) protein (324aa)
Aldo/keto reductase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NFJ9_ROSCS
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABU56221.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_4253_3
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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1312..2643
DNA (1332bp) protein (444aa)
signal recognition particle Tax=Salinispora RepID=UPI0003727C74
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
ffh; signal recognition particle protein
PLM3_60_coex_sep16_scaffold_4253_4
Leuconostoc pseudomesenteroides, Leuconostoc, Lactobacillales, Bacilli, Firmicutes, Bacteria

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2740..3090
DNA (351bp) protein (117aa)
30S ribosomal protein S16 Tax=Leuconostoc fallax RepID=UPI00020D97C1
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae; Leuconostoc.;" source="Leuconostoc pseudomesenteroides PS12.;"
rpsP; SSU ribosomal protein S16P
PLM3_60_coex_sep16_scaffold_4253_5
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3097..3333
DNA (237bp) protein (79aa)
UPF0109 protein OBV_28120 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KRZ4_OSCVS
hypothetical protein
UPF0109 protein OBV_28120 {ECO:0000256|HAMAP-Rule:MF_00088}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
PLM3_60_coex_sep16_scaffold_4253_6
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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3438..3944
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AB16_THECD
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_4253_7
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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3949..4626
DNA (678bp) protein (226aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; EC=2.1.1.228 {ECO:0000255|HAMAP-Rule:MF_00605};; M1G-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
tRNA (guanine-N(1)-)-methyltransferase Tax=Frankia alni (strain ACN14a) RepID=TRMD_FRAAA
PLM3_60_coex_sep16_scaffold_4253_8
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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4717..5073
DNA (357bp) protein (119aa)
50S ribosomal protein L19 Tax=Modestobacter marinus (strain BC501) RepID=I4F2D6_MODMB
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
rplS; 50S ribosomal protein L19
PLM3_60_coex_sep16_scaffold_4253_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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5092..5814
DNA (723bp) protein (241aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B441_FRADG
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_4253_10
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

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5841..6572
DNA (732bp) protein (244aa)
ribonuclease H (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
Ribonuclease HII Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q214_STANL
PLM3_60_coex_sep16_scaffold_4253_11
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6569..6865
DNA (297bp) protein (99aa)
hypothetical protein Tax=Arthrobacter sp. M2012083 RepID=UPI000365DD52
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:GAB16130.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
PLM3_60_coex_sep16_scaffold_4253_12
unknown

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6912..7034
DNA (123bp) protein (41aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_4253_13
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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7121..7864
DNA (744bp) protein (248aa)
Cell envelope-related transcriptional attenuator Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LZC0_ACIFD
Putative transcriptional regulator YvhJ {ECO:0000313|EMBL:KJF16789.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
cell envelope-related transcriptional attenuator
Displaying 13 items

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