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PLM3_60_coex_sep16_scaffold_5030

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_5030_1
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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3..458
DNA (456bp) protein (152aa)
Probable malonic semialdehyde oxidative decarboxylase IolD Tax=Pantoea ananatis (strain AJ13355) RepID=F2EWQ0_PANAA
iolD; malonic semialdehyde oxidative decarboxylase IolD
Thiamine pyrophosphate enzyme, central region {ECO:0000313|EMBL:ABG04678.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_5030_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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853..1887
DNA (1035bp) protein (345aa)
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AEA25932.1}; EC=1.2.1.27 {ECO:0000313|EMBL:AEA25932.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
methylmalonate-semialdehyde dehydrogenase Tax=Nocardiopsis lucentensis RepID=UPI0003478742
PLM3_60_coex_sep16_scaffold_5030_3
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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1987..2985
DNA (999bp) protein (333aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVW8_ACIC1
periplasmic binding protein/LacI transcriptional regulator
Monosaccharide ABC transporter substrate-binding protein, CUT2 family {ECO:0000313|EMBL:ABK53578.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_5030_4
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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3055..4113
DNA (1059bp) protein (353aa)
Monosaccharide ABC transporter membrane protein, CUT2 family Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVW9_ACIC1
inner-membrane translocator
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:ABK53579.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_5030_5
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4110..5021
DNA (912bp) protein (304aa)
ABC transporter ATP-binding protein Tax=Leucobacter sp. UCD-THU RepID=UPI0003753677
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYT54614.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
ABC transporter-like protein
PLM3_60_coex_sep16_scaffold_5030_6
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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5018..5881
DNA (864bp) protein (288aa)
Xylose isomerase domain protein TIM barrel Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVX2_ACIC1
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABK53582.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_5030_7
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

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5894..6802
DNA (909bp) protein (303aa)
myo-inosose-2 dehydratase (EC:4.2.1.44)
Myo-inosose-2 dehydratase {ECO:0000313|EMBL:ADD40370.1}; EC=4.2.1.44 {ECO:0000313|EMBL:ADD40370.1};; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
hypothetical protein Tax=Nocardiopsis chromatogenes RepID=UPI000348A7CA
PLM3_60_coex_sep16_scaffold_5030_8
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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7688..8674
DNA (987bp) protein (329aa)
Uncharacterized protein Tax=Streptomyces RepID=O54173_STRCO
Uncharacterized protein {ECO:0000313|EMBL:EXG82932.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_5030_9
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8656..9108)
DNA (453bp) protein (151aa)
Uncharacterized protein {ECO:0000313|EMBL:CCH78965.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
hypothetical protein bin=GWB2_Ignavibacteria_35_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
PLM3_60_coex_sep16_scaffold_5030_10
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(9105..10133)
DNA (1029bp) protein (343aa)
Transcriptional regulator, LacI family Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S6L8_GEOOG
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADB75392.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_60_coex_sep16_scaffold_5030_11
unknown

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comp(10391..10672)
DNA (282bp) protein (94aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5030_12
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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11422..12234
DNA (813bp) protein (271aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI000371D6E1
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABK53584.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_5030_13
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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12201..12326
DNA (126bp) protein (42aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI000371D6E1
Sugar phosphate isomerase {ECO:0000313|EMBL:EWT02173.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
xylose isomerase domain-containing protein
PLM3_60_coex_sep16_scaffold_5030_14
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(12319..13185)
DNA (867bp) protein (289aa)
3-hydroxyisobutyrate dehydrogenase-like protein (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase-like protein {ECO:0000313|EMBL:CCH30835.1}; EC=1.1.1.31 {ECO:0000313|EMBL:CCH30835.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
3-hydroxyisobutyrate dehydrogenase-like protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JSV8_SACES
PLM3_60_coex_sep16_scaffold_5030_15
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(13286..13699)
DNA (414bp) protein (138aa)
hypothetical protein Tax=Streptomyces RepID=UPI0003665FA1
Endoribonuclease L-PSP {ECO:0000313|EMBL:AKH85225.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
endoribonuclease L-PSP
PLM3_60_coex_sep16_scaffold_5030_16
Arthrobacter nitrophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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13749..14279
DNA (531bp) protein (177aa)
Trypsin-like serine protease with C-terminal PDZ domain Tax=Arthrobacter sp. SJCon RepID=L8TQX4_9MICC
Trypsin-like serine protease with C-terminal PDZ domain {ECO:0000313|EMBL:ELT45728.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter nitrophenolicus.;"
trypsin-like serine protease with C-terminal PDZ domain
PLM3_60_coex_sep16_scaffold_5030_17
R_Gammaproteobacteria_60_43, Gammaproteobacteria, Proteobacteria, Bacteria

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14276..15610
DNA (1335bp) protein (445aa)
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Roseovarius sp. TM1035 RepID=A6E608_9RHOB
Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_60_43_curated
Displaying 17 items

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