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PLM3_60_coex_sep16_scaffold_2214

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2214_1
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..1154
DNA (1152bp) protein (384aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MS46_9ACTO
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGL20070.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM3_60_coex_sep16_scaffold_2214_2
RBG_13_OP11_Beckwithbacteria_42_9_curated, Beckwithbacteria, Microgenomates, Bacteria

Not on your lists

comp(1177..1863)
DNA (687bp) protein (229aa)
Uncharacterized protein Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JYW2_STREN
hypothetical protein
Tax=RBG_13_OP11_Beckwithbacteria_42_9_curated
PLM3_60_coex_sep16_scaffold_2214_3
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1866..2825)
DNA (960bp) protein (320aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000381D95E
ABC transporter permease {ECO:0000313|EMBL:EWT07930.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
peptide transport system permease protein
PLM3_60_coex_sep16_scaffold_2214_4
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2837..3769)
DNA (933bp) protein (311aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000374DE81
ABC transporter permease {ECO:0000313|EMBL:EWT07931.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
appC; oligopeptide transport system permease AppC
PLM3_60_coex_sep16_scaffold_2214_5
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3766..4869)
DNA (1104bp) protein (368aa)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI00036D3138
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWT07932.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
putative peptide ABC transporter ATP-binding protein
PLM3_60_coex_sep16_scaffold_2214_6
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4871..6679)
DNA (1809bp) protein (603aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00036DE18A
Bacterial extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EWM64817.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
extracellular solute-binding protein
PLM3_60_coex_sep16_scaffold_2214_7
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7310..7789
DNA (480bp) protein (160aa)
RNA polymerase sigma factor SigA Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B375_FRADG
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;"
RpoD subfamily RNA polymerase sigma-70 subunit
PLM3_60_coex_sep16_scaffold_2214_8
unknown

Not on your lists

7906..8037
DNA (132bp) protein (44aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2214_9
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8045..8425
DNA (381bp) protein (127aa)
Response regulator, two-component system Tax=Rhodococcus opacus M213 RepID=K8XRB9_RHOOP
Response regulator, two-component system {ECO:0000313|EMBL:EKT79575.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
Putative transcriptional regulator
PLM3_60_coex_sep16_scaffold_2214_10
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8403..9056)
DNA (654bp) protein (218aa)
Response regulator, two-component system Tax=Rhodococcus RepID=K8XDW0_RHOOP
Serine/threonine-protein kinase pknK
Response regulator, two-component system {ECO:0000313|EMBL:ELB93692.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
PLM3_60_coex_sep16_scaffold_2214_11
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9141..10514
DNA (1374bp) protein (458aa)
Two-component system sensor kinase Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JMU9_STRHJ
two-component system sensor kinase
Two-component system sensor kinase {ECO:0000313|EMBL:AEY85798.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
PLM3_60_coex_sep16_scaffold_2214_12
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10636..11700
DNA (1065bp) protein (355aa)
Serine protease Tax=Amycolatopsis mediterranei RepID=G0FVX3_AMYMS
serine protease
Serine protease {ECO:0000313|EMBL:AEK43910.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
PLM3_60_coex_sep16_scaffold_2214_13
unknown

Not on your lists

comp(11737..11946)
DNA (210bp) protein (70aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003604B57
PLM3_60_coex_sep16_scaffold_2214_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(12188..12970)
DNA (783bp) protein (261aa)
hypothetical protein Tax=Nocardiopsis lucentensis RepID=UPI000346AADE
ABC transporter
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2214_15
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12967..13923)
DNA (957bp) protein (319aa)
Uncharacterized protein Tax=Streptomycetaceae bacterium MP113-05 RepID=V6JQ76_9ACTO
ABC transporter {ECO:0000313|EMBL:EWT02346.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2214_16
unknown

Not on your lists

comp(14058..14195)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2214_17
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14197..14544)
DNA (348bp) protein (116aa)
ABC-2 type transporter Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1M7_CONWI
ABC transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_60_coex_sep16_scaffold_2214_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14585..14860
DNA (276bp) protein (92aa)
Putative transcriptional regulator Tax=Sorangium cellulosum (strain So ce56) RepID=A9GSW7_SORC5
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CAN96866.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM3_60_coex_sep16_scaffold_2214_19
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14929..15129)
DNA (201bp) protein (67aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L7X6_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW10781.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_2214_20
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15129..15968)
DNA (840bp) protein (280aa)
XRE family transcriptional regulator Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002627AAF
Putative DNA-binding protein in cluster with Type I restriction-modification system {ECO:0000313|EMBL:EWC61393.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
helix-turn-helix domain-containing protein
PLM3_60_coex_sep16_scaffold_2214_21
unknown

Not on your lists

16303..16587
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2214_22
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16703..16903
DNA (201bp) protein (67aa)
Putative regulator Tax=Frankia alni (strain ACN14a) RepID=Q0RC54_FRAAA
regulator
Putative regulator {ECO:0000313|EMBL:CAJ64974.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM3_60_coex_sep16_scaffold_2214_23
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(16930..18117)
DNA (1188bp) protein (396aa)
Adenylyl cyclase class-3/4/guanylyl cyclase bin=GWC2_Chloroflexi_73_18 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_RIF_CHLX_70_13_curated
Displaying 23 items

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