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PLM3_60_coex_sep16_scaffold_2527

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2527_1
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(2..529)
DNA (528bp) protein (176aa)
Endonuclease/exonuclease/phosphatase Tax=Microcoleus vaginatus FGP-2 RepID=F5UFF7_9CYAN
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:EGK88809.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
endonuclease
PLM3_60_coex_sep16_scaffold_2527_2
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(586..984)
DNA (399bp) protein (133aa)
Uncharacterized protein Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3V621_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAC85297.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
endoribonuclease L-PSP
PLM3_60_coex_sep16_scaffold_2527_3
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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1138..2661
DNA (1524bp) protein (508aa)
beta-glucosidase (EC:3.2.1.21)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
Beta-glucosidase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BDF5_STRRD
PLM3_60_coex_sep16_scaffold_2527_4
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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2658..3680
DNA (1023bp) protein (341aa)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI00036B53F4
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADG88607.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM3_60_coex_sep16_scaffold_2527_5
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

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comp(3646..4368)
DNA (723bp) protein (241aa)
TetR family transcriptional regulator Tax=Streptomyces prunicolor RepID=UPI000362C512
regulatory protein TetR
Tax=RBG_16_Chloroflexi_57_11_curated
PLM3_60_coex_sep16_scaffold_2527_6
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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4440..5393
DNA (954bp) protein (318aa)
NAD-dependent epimerase/dehydratase Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SMT0_NOCSJ
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABL83115.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM3_60_coex_sep16_scaffold_2527_7
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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5493..6056
DNA (564bp) protein (188aa)
Peptidase U62 family protein Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZXJ9_9ACTN
peptidase U62 family protein
Peptidase U62 family protein {ECO:0000313|EMBL:BAN01403.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
PLM3_60_coex_sep16_scaffold_2527_8
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

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6011..6751
DNA (741bp) protein (247aa)
Putative peptidase Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z7S2_9ACTN
Peptidase U62 family protein {ECO:0000313|EMBL:KGA12417.1}; species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
peptidase U62 family protein
PLM3_60_coex_sep16_scaffold_2527_9
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

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6748..8091
DNA (1344bp) protein (448aa)
C69 family peptidase; K03592 PmbA protein bin=RBG_19FT_COMBO_GAL15_69_19 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Uncharacterized protein {ECO:0000313|EMBL:KIE48576.1}; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
TldD; Zn-dependent protease
PLM3_60_coex_sep16_scaffold_2527_10
Streptomyces sp. NTK 937, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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8092..8988
DNA (897bp) protein (299aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000377A285
Uncharacterized protein {ECO:0000313|EMBL:KDQ70535.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NTK 937.;"
hydrolase
PLM3_60_coex_sep16_scaffold_2527_11
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9039..11663)
DNA (2625bp) protein (875aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00037CF23E
Micromonospora carbonacea strain JXNU-1 contig2, whole genome shotgun sequence {ECO:0000313|EMBL:KIR63031.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2527_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(11666..12427)
DNA (762bp) protein (254aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2PH15_9ACTO
antimicrobial peptide ABC transporter ATPase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_2527_13
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(12411..12971)
DNA (561bp) protein (187aa)
Putative PadR family transcriptional regulator Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4N4U8_KITSK
putative PadR family transcriptional regulator
Putative PadR family transcriptional regulator {ECO:0000313|EMBL:BAJ26229.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
PLM3_60_coex_sep16_scaffold_2527_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13108..14235)
DNA (1128bp) protein (376aa)
Alpha-methylacyl-CoA racemase bin=GWC2_Methylomirabilis_70_16 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_2527_15
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14345..15238
DNA (894bp) protein (298aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5PE70_9MYCO
Putative oxidoreductase {ECO:0000313|EMBL:KGA05261.1}; species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
putative oxidoreductase
PLM3_60_coex_sep16_scaffold_2527_16
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15263..15862)
DNA (600bp) protein (200aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000256|SAAS:SAAS00094257};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
Undecaprenyl-diphosphatase Tax=Geobacter sulfurreducens RepID=UPPP_GEOSL
uppP; undecaprenyl diphosphate phosphatase
PLM3_60_coex_sep16_scaffold_2527_17
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(15841..16230)
DNA (390bp) protein (130aa)
uppP; undecaprenyl-diphosphatase UppP (EC:3.6.1.27)
Undecaprenyl-diphosphatase Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LGR3_THEPS
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_60_coex_sep16_scaffold_2527_18
unknown

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comp(16292..16879)
DNA (588bp) protein (196aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2527_19
GWC2_SYX_53_9_curated, Bacteria

Not on your lists

comp(17092..17901)
DNA (810bp) protein (270aa)
Purine nucleoside phosphorylase Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CLU2_SYNLT
methylthioadenosine phosphorylase
Tax=GWC2_SYX_53_9_curated
PLM3_60_coex_sep16_scaffold_2527_20
unknown

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18082..18690
DNA (609bp) protein (203aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2527_21
unknown

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19345..19536
DNA (192bp) protein (64aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2527_22
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19540..19842)
DNA (303bp) protein (101aa)
Regulatory protein, FmdB family Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7R9_NAKMY
FmdB family regulatory protein
Regulatory protein, FmdB family {ECO:0000313|EMBL:ACV80922.1}; species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
PLM3_60_coex_sep16_scaffold_2527_23
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19912..21084)
DNA (1173bp) protein (391aa)
ATPase involved in chromosome partitioning-like protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AEB9_THECD
chromosome partitioning ATPase
ATPase involved in chromosome partitioning-like protein {ECO:0000313|EMBL:ACY95735.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Displaying 23 items

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