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PLM3_60_coex_sep16_scaffold_1046

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1046_1

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comp(1..636)
DNA (636bp) protein (212aa)
RNA polymerase sigma-70 factor, ECF subfamily Tax=uncultured prokaryote RepID=H5SL68_9ZZZZ
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:BAL56904.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
RNA polymerase sigma70
PLM3_60_coex_sep16_scaffold_1046_2
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1329..3011
DNA (1683bp) protein (561aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035FFD76
trxB; thioredoxin reductase
Thioredoxin reductase {ECO:0000313|EMBL:AIJ24434.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM3_60_coex_sep16_scaffold_1046_3
Amycolatopsis lurida, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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3008..4255
DNA (1248bp) protein (416aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis lurida NRRL 2430.;"
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037D0CF1
histidine kinase
PLM3_60_coex_sep16_scaffold_1046_4
unknown

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4595..4819
DNA (225bp) protein (75aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1046_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5277..6410
DNA (1134bp) protein (378aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PBG4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_60_coex_sep16_scaffold_1046_6
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6416..8308
DNA (1893bp) protein (631aa)
diguanylate kinase (EC:2.7.7.65)
Diguanylate kinase {ECO:0000313|EMBL:CCH86306.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCH86306.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
Diguanylate kinase Tax=Modestobacter marinus (strain BC501) RepID=I4ESE3_MODMB
PLM3_60_coex_sep16_scaffold_1046_7
unknown

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comp(8227..8898)
DNA (672bp) protein (224aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1046_8
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

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9099..10601
DNA (1503bp) protein (501aa)
Diguanylate cyclase Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9TYN7_9CYAN
diguanylate cyclase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM3_60_coex_sep16_scaffold_1046_9
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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10935..12473
DNA (1539bp) protein (513aa)
Extracellular solute-binding protein, family 5 Tax=Mycobacterium RepID=A1UE12_MYCSK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDE99037.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
extracellular solute-binding protein
PLM3_60_coex_sep16_scaffold_1046_10
unknown

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12481..12573
DNA (93bp) protein (31aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1046_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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12876..13379
DNA (504bp) protein (168aa)
Transcriptional regulator, TraR/DksA family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F5W1_CONWI
TraR/DksA family transcriptional regulator
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:ADB52660.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_60_coex_sep16_scaffold_1046_12
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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13581..15449
DNA (1869bp) protein (623aa)
GTP-binding protein TypA Tax=Frankia sp. (strain CcI3) RepID=Q2J677_FRASC
GTP-binding protein TypA
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3_60_coex_sep16_scaffold_1046_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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15528..16016
DNA (489bp) protein (163aa)
YbaK/prolyl-tRNA synthetase associated region Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01U87_SOLUE
prolyl-tRNA synthetase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1046_14
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

16080..16502
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=Patulibacter medicamentivorans RepID=H0E965_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN09803.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
penicillin-binding protein
PLM3_60_coex_sep16_scaffold_1046_15
Arthrobacter siccitolerans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(16459..17526)
DNA (1068bp) protein (356aa)
ATP-dependent DNA ligase Tax=Actinopolymorpha alba RepID=UPI000369FD34
ligC; ATP-dependent DNA ligase
ATP dependent DNA ligase domain protein {ECO:0000313|EMBL:CCQ48409.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter siccitolerans.;"
PLM3_60_coex_sep16_scaffold_1046_16
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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17778..18824
DNA (1047bp) protein (349aa)
Alcohol dehydrogenase GroES-like protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARJ5_RUBXD
alcohol dehydrogenase GroES-like protein
Alcohol dehydrogenase GroES-like protein {ECO:0000313|EMBL:ABG05983.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_1046_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(18828..19196)
DNA (369bp) protein (123aa)
chemotaxis protein CheY Tax=Hoeflea sp. 108 RepID=UPI0003732100
pleD; response regulator PleD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1046_18
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19325..19534)
DNA (210bp) protein (70aa)
Cold-shock DNA-binding protein family Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BJG1_SANKS
cold-shock DNA-binding protein family
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ACZ20217.1}; species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
PLM3_60_coex_sep16_scaffold_1046_19
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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20199..21080
DNA (882bp) protein (294aa)
Putative uncharacterized protein Tax=Streptomyces zinciresistens K42 RepID=G2G796_9ACTO
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM3_60_coex_sep16_scaffold_1046_20
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21118..22404)
DNA (1287bp) protein (429aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI0003770C88
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACQ80960.1}; species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
PLM3_60_coex_sep16_scaffold_1046_21
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23006..23425)
DNA (420bp) protein (140aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00037437F2
Uncharacterized protein {ECO:0000313|EMBL:EWT02167.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1046_22
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(23656..27099)
DNA (3444bp) protein (1148aa)
Adenylate/guanylate cyclase bin=GWC2_Chloroflexi_73_18 species=Micromonospora lupini genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
putative adenylate/guanylate cyclase
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_1046_23
unknown

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comp(27116..27601)
DNA (486bp) protein (162aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1046_24
Rhodococcus rhodochrous, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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27801..27959
DNA (159bp) protein (53aa)
Short chain dehydrogenase Tax=Rhodococcus ruber BKS 20-38 RepID=M2YU45_9NOCA
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ETT25676.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodochrous ATCC 21198.;"
putative oxidoreductase
Displaying 24 items

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