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PLM3_60_coex_sep16_scaffold_1053

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1053_1

Not on your lists

comp(3..1301)
DNA (1299bp) protein (433aa)
OmpA domain-containing protein Tax=uncultured prokaryote RepID=H5SGA2_9ZZZZ
OmpA domain-containing protein {ECO:0000313|EMBL:BAL55188.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
putative cable pili-associated 22 kDa adhesin protein
PLM3_60_coex_sep16_scaffold_1053_2
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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1715..3235
DNA (1521bp) protein (507aa)
Alkaline phosphatase (EC:3.1.3.1)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4RDN1_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP69967.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
PLM3_60_coex_sep16_scaffold_1053_3
Arthrobacter sp. PAMC25486, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3560..4429)
DNA (870bp) protein (290aa)
hypothetical protein Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00037325B4
short-chain dehydrogenase
Short-chain dehydrogenase {ECO:0000313|EMBL:AIX99979.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. PAMC25486.;"
PLM3_60_coex_sep16_scaffold_1053_4
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4466..5443)
DNA (978bp) protein (326aa)
Alcohol dehydrogenase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AY90_STRRD
alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:ACZ87100.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_1053_5
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5753..6061)
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) RepID=F0M3J8_ARTPP
Uncharacterized protein {ECO:0000313|EMBL:KFF60520.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1053_6
unknown

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comp(6091..6537)
DNA (447bp) protein (149aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1053_7
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6685..7275)
DNA (591bp) protein (197aa)
hypothetical protein Tax=Streptomyces sp. SS RepID=UPI00036C6F39
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL79543.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM3_60_coex_sep16_scaffold_1053_8
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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7375..8046
DNA (672bp) protein (224aa)
Transcriptional regulator, TetR family Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PNT5_KRIFD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADB32753.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM3_60_coex_sep16_scaffold_1053_9
unknown

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comp(8154..8270)
DNA (117bp) protein (39aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1053_10
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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8427..10706
DNA (2280bp) protein (760aa)
Uncharacterized protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RQM6_BLASD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG05394.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM3_60_coex_sep16_scaffold_1053_11

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11118..11366
DNA (249bp) protein (83aa)
hypothetical protein Tax=Colwellia piezophila RepID=UPI000360BB2D
Marine sediment metagenome DNA, contig: S06H3_L01033 {ECO:0000313|EMBL:GAI16800.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1053_12
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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11556..11969
DNA (414bp) protein (138aa)
transposase Tax=Salinispora pacifica RepID=UPI00036279F6
transposase, IS4 family protein
Transposase, IS4 family {ECO:0000313|EMBL:ABP53469.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
PLM3_60_coex_sep16_scaffold_1053_13
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12179..12520
DNA (342bp) protein (114aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000362FA5D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL91621.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM3_60_coex_sep16_scaffold_1053_14
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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12549..13133
DNA (585bp) protein (195aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8G6_CONWI
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:KJK45954.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM3_60_coex_sep16_scaffold_1053_15
Deinococcus gobiensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(13335..14720)
DNA (1386bp) protein (462aa)
Uncharacterized protein Tax=Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) RepID=H8H1T9_DEIGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD27486.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 /; I-0).;"
PLM3_60_coex_sep16_scaffold_1053_16
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14821..15681)
DNA (861bp) protein (287aa)
Transposase, IS4 family Tax=Frankia sp. (strain CcI3) RepID=Q2J7K3_FRASC
Transposase {ECO:0000313|EMBL:EWM68807.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
transposase, IS4
PLM3_60_coex_sep16_scaffold_1053_17
unknown

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15732..16304
DNA (573bp) protein (191aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1053_18
Deinococcus gobiensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

16416..17789
DNA (1374bp) protein (458aa)
Uncharacterized protein Tax=Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) RepID=H8H1T9_DEIGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD27486.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 /; I-0).;"
PLM3_60_coex_sep16_scaffold_1053_19
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17918..18259
DNA (342bp) protein (114aa)
Transposase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHZ4_RHOMR
transposase
Transposase {ECO:0000313|EMBL:AEN73752.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Displaying 19 items

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