ggKbase home page

PLM3_60_coex_sep16_scaffold_1088

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1088_1
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..205)
DNA (204bp) protein (68aa)
Aspartate aminotransferase {ECO:0000313|EMBL:CEL18180.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CEL18180.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1)
Aspartate aminotransferase (Transaminase a) (Aspat) bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PLM3_60_coex_sep16_scaffold_1088_2
unknown

Not on your lists

comp(297..593)
DNA (297bp) protein (99aa)
hypothetical protein Tax=Fluoribacter dumoffii RepID=UPI00026C7982
PLM3_60_coex_sep16_scaffold_1088_3

Not on your lists

comp(703..1125)
DNA (423bp) protein (141aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000366CFAC
Thioesterase superfamily protein {ECO:0000313|EMBL:AHE14579.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1088_4
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1197..1535
DNA (339bp) protein (113aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00037B3B30
ArsR family transcriptional regulator {ECO:0000313|EMBL:KDN21102.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
ArsR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_1088_5
unknown

Not on your lists

1648..1815
DNA (168bp) protein (56aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000374F505
PLM3_60_coex_sep16_scaffold_1088_6
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1839..2357
DNA (519bp) protein (173aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000366370F
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ACZ87537.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_1088_7
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2354..3103
DNA (750bp) protein (250aa)
ABC transporter Tax=Nonomuraea coxensis RepID=UPI00037FB6CC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETK37972.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
ABC transporter nucleotide binding/ATPase
PLM3_60_coex_sep16_scaffold_1088_8
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3103..4938
DNA (1836bp) protein (612aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00036AA23A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ87539.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_1088_9

Not on your lists

comp(4929..5819)
DNA (891bp) protein (297aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00038147DC
Putative coenzyme F420-dependent N(5),N(10)-methylenetetrahydromethanopterin reductase {ECO:0000313|EMBL:AHE14688.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
oxidoreductase
PLM3_60_coex_sep16_scaffold_1088_10
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5833..6483)
DNA (651bp) protein (217aa)
Two-component system, response regulator of the LuxR family Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JY61_SACES
Two-component system, response regulator of the LuxR family
Two-component system, response regulator of the LuxR family {ECO:0000313|EMBL:CCH30277.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_60_coex_sep16_scaffold_1088_11
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6480..7586)
DNA (1107bp) protein (369aa)
Uncharacterized protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JW65_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH30276.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_60_coex_sep16_scaffold_1088_12
Streptomyces sioyaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7690..8415
DNA (726bp) protein (242aa)
peptide ABC transporter ATP-binding protein Tax=Streptomyces vitaminophilus RepID=UPI00035CBEA6
Sio4 {ECO:0000313|EMBL:ACN80635.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sioyaensis.;"
ABC transporter ATP-binding protein
PLM3_60_coex_sep16_scaffold_1088_13
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8421..10976
DNA (2556bp) protein (852aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2N1F4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC79319.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
ABC transport system integral membrane protein
PLM3_60_coex_sep16_scaffold_1088_14
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10998..12167)
DNA (1170bp) protein (390aa)
Hydrolase Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EY66_STRRM
Hydrolase {ECO:0000313|EMBL:ELQ84235.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
epoxide hydrolase domain-containing protein
PLM3_60_coex_sep16_scaffold_1088_15
Amycolatopsis orientalis, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12255..13220
DNA (966bp) protein (322aa)
DeoR family transcriptional regulator Tax=Amycolatopsis orientalis HCCB10007 RepID=R4SNZ7_AMYOR
DeoR family transcriptional regulator
DeoR family transcriptional regulator {ECO:0000313|EMBL:AGM04380.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis orientalis HCCB10007.;"
PLM3_60_coex_sep16_scaffold_1088_16
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13217..13423)
DNA (207bp) protein (69aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003709303
3-oxoacyl-[acyl-carrier-protein] reductase
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:AGZ45980.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_60_coex_sep16_scaffold_1088_17
unknown

Not on your lists

13436..13624
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1088_18

Not on your lists

comp(13735..14502)
DNA (768bp) protein (256aa)
Short-chain dehydrogenase/reductase SDR Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA15_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKL04324.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain dehydrogenase/reductase SDR
PLM3_60_coex_sep16_scaffold_1088_19
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14504..15361)
DNA (858bp) protein (286aa)
Phenylacetic acid catabolic Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV67_RUBXD
phenylacetic acid catabolic
Phenylacetic acid catabolic {ECO:0000313|EMBL:ABG04711.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_1088_20
Thermus filiformis, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(15696..15896)
DNA (201bp) protein (67aa)
hypothetical protein Tax=Thermus oshimai RepID=UPI00036AE66B
Uncharacterized protein {ECO:0000313|EMBL:KGQ22523.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus filiformis.;"
Phenylacetic acid degradation B
PLM3_60_coex_sep16_scaffold_1088_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15896..16207)
DNA (312bp) protein (104aa)
hypothetical protein Tax=Thermus oshimai RepID=UPI000366708A
Predicted metal-sulfur cluster biosynthetic enzyme {ECO:0000313|EMBL:CDM65234.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1088_22
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16204..16455)
DNA (252bp) protein (84aa)
Phenylacetic acid catabolic Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV63_RUBXD
phenylacetic acid catabolic
Phenylacetic acid catabolic {ECO:0000313|EMBL:ABG04715.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_1088_23
Thermus filiformis, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(16397..17047)
DNA (651bp) protein (217aa)
phenylacetic acid catabolic family protein Tax=Thermus oshimai RepID=UPI00037C77A0
Phenylacetic acid catabolic {ECO:0000313|EMBL:KIX84436.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus filiformis.;"
phenylacetic acid catabolic
PLM3_60_coex_sep16_scaffold_1088_24
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17041..17916)
DNA (876bp) protein (292aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MVM4_9ACTO
amidohydrolase 2
Amidohydrolase 2 {ECO:0000313|EMBL:ABG04716.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_1088_25
Thermus filiformis, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(17913..19466)
DNA (1554bp) protein (518aa)
benzoate-CoA ligase (EC:6.2.1.25)
hypothetical protein Tax=Thermus oshimai RepID=UPI00037ED189
4-hydroxybenzoate--CoA ligase {ECO:0000313|EMBL:KGQ21102.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus filiformis.;"
PLM3_60_coex_sep16_scaffold_1088_26
Thermus filiformis, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(19485..20918)
DNA (1434bp) protein (478aa)
succinate-semialdehyde dehydrogenase (NAD(P)+) (EC:1.2.1.16)
hypothetical protein Tax=Thermus oshimai RepID=UPI000364306A
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGQ21103.2}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus filiformis.;"
PLM3_60_coex_sep16_scaffold_1088_27
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20915..21559)
DNA (645bp) protein (215aa)
Transcriptional regulator, TetR family Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV71_RUBXD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABG04707.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_1088_28
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21570..22340)
DNA (771bp) protein (257aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17)
Short chain enoyl-CoA hydratase {ECO:0000313|EMBL:ABG04708.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABG04708.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
hypothetical protein Tax=Thermus oshimai RepID=UPI0003626AEC
PLM3_60_coex_sep16_scaffold_1088_29
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22352..23782)
DNA (1431bp) protein (477aa)
lactaldehyde dehydrogenase (EC:1.2.1.22)
Lactaldehyde dehydrogenase {ECO:0000313|EMBL:ABG04709.1}; EC=1.2.1.22 {ECO:0000313|EMBL:ABG04709.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Lactaldehyde dehydrogenase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV69_RUBXD
PLM3_60_coex_sep16_scaffold_1088_30
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23899..25743
DNA (1845bp) protein (615aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00037C0C86
AMP-dependent synthetase and ligase
Tax=GWC2_Deltaproteobacteria_65_14_curated
Displaying items 1-30 of 38 in total

View Taxonomy