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PLM3_60_coex_sep16_scaffold_357

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_357_1
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1005)
DNA (1005bp) protein (335aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI000368212B
DEAD/DEAH box helicase
DEAD/H associated domain protein {ECO:0000313|EMBL:AEH10891.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_60_coex_sep16_scaffold_357_2
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1120..4749
DNA (3630bp) protein (1210aa)
kgd; 2-oxoglutarate decarboxylase (EC:4.1.1.71)
2-oxoglutarate decarboxylase {ECO:0000313|EMBL:CCG04810.1}; EC=4.1.1.71 {ECO:0000313|EMBL:CCG04810.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
2-oxoglutarate decarboxylase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RJ65_BLASD
PLM3_60_coex_sep16_scaffold_357_3
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4789..5160
DNA (372bp) protein (124aa)
histidine kinase Tax=Streptomyces rapamycinicus RepID=UPI000383036B
histidine kinase
Histidine kinase {ECO:0000313|EMBL:AGP55134.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
PLM3_60_coex_sep16_scaffold_357_4
unknown

Not on your lists

5228..6310
DNA (1083bp) protein (361aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_357_5
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6322..7725
DNA (1404bp) protein (468aa)
Glutamate-ammonia ligase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B882_STRRD
Glutamate--ammonia ligase {ECO:0000313|EMBL:ETK36449.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
glutamate--ammonia ligase
PLM3_60_coex_sep16_scaffold_357_6
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7738..8943
DNA (1206bp) protein (402aa)
Uncharacterized protein Tax=Streptomyces albulus CCRC 11814 RepID=S9XTE9_STRA9
Amidohydrolase {ECO:0000313|EMBL:EXU86231.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus PD-1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_357_7
Streptomyces sp. RSD-27, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8993..9937)
DNA (945bp) protein (315aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000374E666
Epimerase {ECO:0000313|EMBL:KIF05095.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. RSD-27.;"
epimerase
PLM3_60_coex_sep16_scaffold_357_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10042..10929
DNA (888bp) protein (296aa)
RNA polymerase sigma24 factor Tax=Frankia sp. Iso899 RepID=UPI0003B4800E
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB50647.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_60_coex_sep16_scaffold_357_9
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10926..12578)
DNA (1653bp) protein (551aa)
putative thymidylate synthase (EC:2.1.1.-)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z1A6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM64508.1}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
PLM3_60_coex_sep16_scaffold_357_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(12575..13387)
DNA (813bp) protein (271aa)
4-hydroxy-tetrahydrodipicolinate reductase Tax=Mycobacterium bovis RepID=DAPB_MYCBP
dihydrodipicolinate reductase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_357_11
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13485..14210
DNA (726bp) protein (242aa)
GCN5-related N-acetyltransferase Tax=Micromonospora lupini str. Lupac 08 RepID=I0KXV9_9ACTO
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65425.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
GCN5-like N-acetyltransferase
PLM3_60_coex_sep16_scaffold_357_12
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14251..15540)
DNA (1290bp) protein (430aa)
Pyridine nucleotide-disulfide oxidoreductase Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WFC8_9ACTO
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFL28886.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
FAD-binding monooxygenase
PLM3_60_coex_sep16_scaffold_357_13
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15537..16946)
DNA (1410bp) protein (470aa)
ferredoxin Tax=Streptomyces canus RepID=UPI00036FE9C3
oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:CBG75867.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
PLM3_60_coex_sep16_scaffold_357_14
Streptomyces sp. PRh5, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17006..18439)
DNA (1434bp) protein (478aa)
Glycerol kinase Tax=Streptomyces sp. HGB0020 RepID=S2YR68_9ACTO
Carbohydrate kinase {ECO:0000313|EMBL:EXU65131.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PRh5.;"
putative carbohydrate kinase
PLM3_60_coex_sep16_scaffold_357_15
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(18459..19079)
DNA (621bp) protein (207aa)
Putative uncharacterized protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQG2_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU59808.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_357_16
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19091..20365)
DNA (1275bp) protein (425aa)
Peptidase M16 domain protein Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LV19_ACIC1
peptidase M16 domain-containing protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ABK53279.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_357_17
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20370..22523)
DNA (2154bp) protein (718aa)
guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000256|SAAS:SAAS00274805}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000256|SAAS:SAAS00274803};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
Polyribonucleotide nucleotidyltransferase Tax=Frankia sp. (strain EuI1c) RepID=E3J046_FRASU
PLM3_60_coex_sep16_scaffold_357_18
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(22828..23094)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W8G9_9ACTO
30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_60_coex_sep16_scaffold_357_19
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23251..24210)
DNA (960bp) protein (320aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
Riboflavin biosynthesis protein RibF Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3QAV3_STANL
riboflavin biosynthesis protein RibF
PLM3_60_coex_sep16_scaffold_357_20
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(24246..25142)
DNA (897bp) protein (299aa)
tRNA pseudouridine synthase B Tax=Isoptericola variabilis (strain 225) RepID=F6FRY9_ISOV2
tRNA pseudouridine synthase B
Tax=RBG_16_Actinobacteria_70_17_curated
PLM3_60_coex_sep16_scaffold_357_21
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25151..25810)
DNA (660bp) protein (220aa)
Exopolyphosphatase-like protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AXT3_STRRD
exopolyphosphatase-like protein
Exopolyphosphatase-like protein {ECO:0000313|EMBL:ACZ85104.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_357_22
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(25807..26067)
DNA (261bp) protein (87aa)
Exopolyphosphatase-like protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AXT3_STRRD
exopolyphosphatase-like protein
Tax=RBG_16_Actinobacteria_67_15_curated
PLM3_60_coex_sep16_scaffold_357_23
Brachybacterium muris, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26064..26453)
DNA (390bp) protein (130aa)
hypothetical protein Tax=Brachybacterium muris RepID=UPI00034C73F1
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium muris UCD-AY4.;"
PLM3_60_coex_sep16_scaffold_357_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(26460..26753)
DNA (294bp) protein (98aa)
Uncharacterized conserved protein Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MQV2_SACVD
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_357_25
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26758..28572)
DNA (1815bp) protein (605aa)
Translation initiation factor IF-2 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=IF2_NOCSJ
infB; translation initiation factor IF-2
Tax=CG_Solirubrobact_01
PLM3_60_coex_sep16_scaffold_357_26

Not on your lists

comp(29640..29987)
DNA (348bp) protein (116aa)
Putative nucleic-acid-binding protein implicated in transcription termination Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PLA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKM21170.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_357_27
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30005..31033)
DNA (1029bp) protein (343aa)
NusA antitermination factor Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAF7_THECD
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_357_28
Desulfurivibrio alkaliphilus, Desulfurivibrio, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31089..31535)
DNA (447bp) protein (149aa)
Ribosome maturation factor RimP Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z4T7_DESAT
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfurivibrio.;" source="Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2).;"
PLM3_60_coex_sep16_scaffold_357_29
unknown

Not on your lists

comp(31715..32197)
DNA (483bp) protein (161aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_357_30
Streptomyces lavendulae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32381..33613
DNA (1233bp) protein (411aa)
Unknonw Tax=Streptomyces lavendulae RepID=B0CN45_STRLA
Unknonw {ECO:0000313|EMBL:ABQ41266.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lavendulae.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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