ggKbase home page

PLM3_60_coex_sep16_scaffold_420

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_420_1
unknown

Not on your lists

comp(538..681)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_420_2
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(915..1826)
DNA (912bp) protein (304aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI000380485E
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AGZ44297.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_60_coex_sep16_scaffold_420_3
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2035..2328
DNA (294bp) protein (98aa)
Zinc finger, UBP-type Tax=Anaeromyxobacter sp. (strain K) RepID=B4UG10_ANASK
hypothetical protein
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG22953.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
PLM3_60_coex_sep16_scaffold_420_4
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

2438..4456
DNA (2019bp) protein (673aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI0003798906
Tail protein {ECO:0000313|EMBL:KIE10732.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
putative phage tail sheath protein
PLM3_60_coex_sep16_scaffold_420_5
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4467..4994
DNA (528bp) protein (176aa)
Conserved hypothetical phage tail region protein Tax=Thioflavicoccus mobilis 8321 RepID=L0GWE5_9GAMM
hypothetical protein
Tax=BJP_IG2103_Rhodocyclales_63_50
PLM3_60_coex_sep16_scaffold_420_6
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5001..5744
DNA (744bp) protein (248aa)
hypothetical protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI0003651582
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
PLM3_60_coex_sep16_scaffold_420_7
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5741..6523
DNA (783bp) protein (261aa)
hypothetical protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00036A17B5
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
PLM3_60_coex_sep16_scaffold_420_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6520..7806
DNA (1287bp) protein (429aa)
hypothetical protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000372CEC8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87659.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PLM3_60_coex_sep16_scaffold_420_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7803..9893
DNA (2091bp) protein (697aa)
hypothetical protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000363847E
ATPase AAA {ECO:0000313|EMBL:EIL97803.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
AAA+ family ATPase
PLM3_60_coex_sep16_scaffold_420_10
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

9890..10147
DNA (258bp) protein (86aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI0003769254
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY34118.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
PLM3_60_coex_sep16_scaffold_420_11
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10144..12657
DNA (2514bp) protein (838aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI000369ACD0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV94281.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
PLM3_60_coex_sep16_scaffold_420_12
unknown

Not on your lists

12670..13203
DNA (534bp) protein (178aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_420_13
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13305..14423
DNA (1119bp) protein (373aa)
Peptidase MA superfamily protein Tax=Burkholderia thailandensis RepID=N0AJZ9_BURTH
peptidase MA superfamily protein
Peptidase MA superfamily protein {ECO:0000313|EMBL:AJY40301.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
PLM3_60_coex_sep16_scaffold_420_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14420..15079
DNA (660bp) protein (220aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI000349E687
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
PLM3_60_coex_sep16_scaffold_420_15
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

15079..15396
DNA (318bp) protein (106aa)
Uncharacterized protein Tax=Calothrix sp. PCC 7507 RepID=K9PLT9_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY34123.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
PLM3_60_coex_sep16_scaffold_420_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15389..16516
DNA (1128bp) protein (376aa)
Uncharacterized protein Tax=Rhodanobacter denitrificans RepID=M4NAS1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87670.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PLM3_60_coex_sep16_scaffold_420_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16513..17028
DNA (516bp) protein (172aa)
Phage-related baseplate assembly protein Tax=Rhodanobacter denitrificans RepID=I4WMJ3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
PLM3_60_coex_sep16_scaffold_420_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17037..17360
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE99_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
PLM3_60_coex_sep16_scaffold_420_19
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17357..17731
DNA (375bp) protein (125aa)
GPW/gp25 family protein Tax=Rhodanobacter denitrificans RepID=I4WMJ1_9GAMM
phage baseplate assembly protein W
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
PLM3_60_coex_sep16_scaffold_420_20
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

17728..20205
DNA (2478bp) protein (826aa)
hypothetical protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000361D6B1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY34128.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
PLM3_60_coex_sep16_scaffold_420_21
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20202..23336
DNA (3135bp) protein (1045aa)
Uncharacterized protein Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE96_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
PLM3_60_coex_sep16_scaffold_420_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23333..25645
DNA (2313bp) protein (771aa)
hypothetical protein Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00035CE310
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87676.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PLM3_60_coex_sep16_scaffold_420_23
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

25655..27097
DNA (1443bp) protein (481aa)
Uncharacterized protein Tax=Calothrix sp. PCC 7507 RepID=K9PMF1_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY34131.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
PLM3_60_coex_sep16_scaffold_420_24
unknown

Not on your lists

28466..28786
DNA (321bp) protein (107aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_420_25
Streptomyces sp. PAMC26508, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28857..29603)
DNA (747bp) protein (249aa)
Putative uncharacterized protein Tax=Streptomyces flavogriseus (strain ATCC 33331 / DSM 40990 / IAF-45CD) RepID=E8WFL6_STRFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGJ53268.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PAMC26508.;"
PLM3_60_coex_sep16_scaffold_420_26
unknown

Not on your lists

comp(30489..31715)
DNA (1227bp) protein (409aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_420_27
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31841..32728
DNA (888bp) protein (296aa)
alpha/beta hydrolase Tax=Frankia sp. Iso899 RepID=UPI0003B56661
Uncharacterized protein {ECO:0000313|EMBL:KIF79438.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
alpha/beta hydrolase fold protein
Displaying 27 items

View Taxonomy