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PLM3_60_coex_sep16_scaffold_449

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_449_1
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1..492
DNA (492bp) protein (164aa)
membrane protein Tax=Streptomyces prunicolor RepID=UPI00036B4445
Membrane protein {ECO:0000313|EMBL:EST36399.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
membrane protein
PLM3_60_coex_sep16_scaffold_449_2
Streptomyces ghanaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(504..1274)
DNA (771bp) protein (257aa)
hypothetical protein Tax=Streptomyces viridosporus RepID=UPI00030B7229
Putative uncharacterized protein {ECO:0000313|EMBL:EFE71712.2}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ghanaensis ATCC 14672.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_449_3
Streptomyces katrae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1271..1879)
DNA (609bp) protein (203aa)
VldV Tax=Streptomyces viridosporus RepID=UPI0001AF07FB
VldV {ECO:0000313|EMBL:KJY26691.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces katrae.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_449_4
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1959..3308)
DNA (1350bp) protein (450aa)
glxD; glutamate synthase large subunit-like protein (EC:1.4.1.13)
Glutamate synthase large subunit-like protein {ECO:0000313|EMBL:CAJ60540.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CAJ60540.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Glutamate synthase large subunit-like protein Tax=Frankia alni (strain ACN14a) RepID=Q0RPJ1_FRAAA
PLM3_60_coex_sep16_scaffold_449_5
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3310..3987)
DNA (678bp) protein (226aa)
Glutamate synthase family protein Tax=Frankia sp. QA3 RepID=I8QTR1_9ACTO
Glutamate synthase family protein {ECO:0000313|EMBL:EIV93449.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
glxC; glutamate synthase subunit alpha
PLM3_60_coex_sep16_scaffold_449_6
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3975..4871)
DNA (897bp) protein (299aa)
Glutamine amidotransferase class-II Tax=Marinobacter manganoxydans MnI7-9 RepID=G6YNF4_9ALTE
Amidophosphoribosyltransferase {ECO:0000313|EMBL:KGK41112.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. A-D6.;"
putative glutamine amidotransferase
PLM3_60_coex_sep16_scaffold_449_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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5031..6392
DNA (1362bp) protein (454aa)
glutamine synthetase I (EC:6.3.1.2)
Glutamine synthetase, type III {ECO:0000313|EMBL:AEA27059.1}; EC=6.3.1.2 {ECO:0000313|EMBL:AEA27059.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Glutamine synthetase, type III Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK6_PSEUX
PLM3_60_coex_sep16_scaffold_449_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(6411..6824)
DNA (414bp) protein (138aa)
uspA; Nucleotide-binding protein, UspA family bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Verrucomicrobia tax=bin8_Chloro organism_group=Chloroflexi
universal stress protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_60_coex_sep16_scaffold_449_9
unknown

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comp(6835..7326)
DNA (492bp) protein (164aa)
hypothetical protein Tax=Mycobacterium sp. 141 RepID=UPI00036CAFB0
PLM3_60_coex_sep16_scaffold_449_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7323..8846)
DNA (1524bp) protein (508aa)
hypothetical protein Tax=Mycobacterium sp. 141 RepID=UPI00036B0C27
putative amino acid transporter-like protein
Putative amino acid transport-related protein {ECO:0000313|EMBL:CAY48562.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
PLM3_60_coex_sep16_scaffold_449_11
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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9018..9656
DNA (639bp) protein (213aa)
DNA-binding protein Tax=Streptomyces acidiscabies RepID=UPI0002881348
Putative transcriptional regulator {ECO:0000313|EMBL:EIV93446.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
HTH-type transcriptional regulator
PLM3_60_coex_sep16_scaffold_449_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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9739..11031
DNA (1293bp) protein (431aa)
FAD dependent oxidoreductase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK7_PSEUX
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:AEA27060.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_449_13
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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11043..11330
DNA (288bp) protein (96aa)
Sarcosine oxidase delta subunit heterotetrameric Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK8_PSEUX
sarcosine oxidase subunit delta
Sarcosine oxidase delta subunit heterotetrameric {ECO:0000313|EMBL:AEA27061.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_449_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11327..14131
DNA (2805bp) protein (935aa)
Sarcosine oxidase {ECO:0000313|EMBL:AEA27062.1}; EC=1.5.3.1 {ECO:0000313|EMBL:AEA27062.1};; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
sarcosine oxidase (EC:1.5.3.1)
Sarcosine oxidase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLK9_PSEUX
PLM3_60_coex_sep16_scaffold_449_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14124..14765
DNA (642bp) protein (214aa)
Sarcosine oxidase gamma subunit Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CLL0_PSEUX
sarcosine oxidase subunit gamma
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:AEA27063.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_449_16
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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14769..16466
DNA (1698bp) protein (566aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
Formate--tetrahydrofolate ligase Tax=Saccharopolyspora erythraea RepID=FTHS_SACEN
Formyltetrahydrofolate synthetase
PLM3_60_coex_sep16_scaffold_449_17
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

16482..18314
DNA (1833bp) protein (611aa)
Putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQW9_ROSCS
hypothetical protein
Putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase {ECO:0000313|EMBL:ABU59965.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_449_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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18326..18805
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C748_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ37809.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_60_coex_sep16_scaffold_449_19
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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18828..20477
DNA (1650bp) protein (550aa)
Regulatory protein LuxR Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1UTU1_9MICC
Regulatory protein LuxR {ECO:0000313|EMBL:EMY33816.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
regulatory protein LuxR
PLM3_60_coex_sep16_scaffold_449_20
Streptomyces sp. NRRL F-4428, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20552..21760
DNA (1209bp) protein (403aa)
Putative oxidoreductase Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XM54_MICPN
Oxidoreductase {ECO:0000313|EMBL:KJK45895.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL F-4428.;"
oxidoreductase
PLM3_60_coex_sep16_scaffold_449_21
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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21774..22169
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0KAN4_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH33884.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_60_coex_sep16_scaffold_449_22
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

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22647..23000
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2DNZ7_9BACT
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3_60_coex_sep16_scaffold_449_23
unknown

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comp(23002..23184)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying 23 items

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