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PLM3_60_coex_sep16_scaffold_562

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_562_1
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(1..1563)
DNA (1563bp) protein (521aa)
Amino acid adenylation domain protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZYL5_OPITP
amino acid adenylation domain-containing protein
Amino acid adenylation domain protein {ECO:0000313|EMBL:ACB75251.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM3_60_coex_sep16_scaffold_562_2
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1560..7121)
DNA (5562bp) protein (1854aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00035CC0A5
Putative Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE {ECO:0000313|EMBL:EPH45771.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
acyl transferase
PLM3_60_coex_sep16_scaffold_562_3
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7177..9486)
DNA (2310bp) protein (770aa)
SARP family transcriptional regulator Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HYB2_9PSEU
SARP family transcriptional regulator {ECO:0000313|EMBL:EOD68485.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
SARP family transcriptional regulator
PLM3_60_coex_sep16_scaffold_562_4
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(9517..10278)
DNA (762bp) protein (254aa)
Uncharacterized protein Tax=Streptomyces niveus NCIMB 11891 RepID=V6JYB8_STRNV
hypothetical protein
Tax=RBG_16_Actinobacteria_70_17_curated
PLM3_60_coex_sep16_scaffold_562_5
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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10489..11250
DNA (762bp) protein (254aa)
4'-phosphopantetheinyl transferase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AD59_THECD
4'-phosphopantetheinyl transferase
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:ACY99368.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_562_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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11247..16304
DNA (5058bp) protein (1686aa)
Linear gramicidin synthase subunit C Tax=Janthinobacterium sp. HH01 RepID=L9PQU3_9BURK
amino acid adenylation protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_562_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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16301..18691
DNA (2391bp) protein (797aa)
hypothetical protein Tax=Streptomyces sp. CNS615 RepID=UPI00035DD6CA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN92544.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM3_60_coex_sep16_scaffold_562_8
unknown

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comp(18764..19648)
DNA (885bp) protein (295aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_562_9
unknown

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comp(19994..20308)
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_562_10
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(20542..21042)
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0KWB3_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH15860.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_562_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(21479..21850)
DNA (372bp) protein (124aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000255|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000255|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PCD {ECO:0000255|HAMAP-Rule:MF_00434};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Putative pterin-4-alpha-carbinolamine dehydratase Tax=Koribacter versatilis (strain Ellin345) RepID=PHS_KORVE
pterin-4-alpha-carbinolamine dehydratase
PLM3_60_coex_sep16_scaffold_562_12
unknown

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comp(21909..22169)
DNA (261bp) protein (87aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_562_13
Mycobacterium sinense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22394..22828
DNA (435bp) protein (145aa)
hypothetical protein Tax=Mycobacterium avium RepID=UPI0003731F7C
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:AEF35155.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain JDM601).;"
PLM3_60_coex_sep16_scaffold_562_14
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(23227..24018)
DNA (792bp) protein (264aa)
Uncharacterized protein Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KD09_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST29977.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
osmosensitive K+ channel histidine kinase-like protein
PLM3_60_coex_sep16_scaffold_562_15
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(24109..24528)
DNA (420bp) protein (140aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF18901.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
PLM3_60_coex_sep16_scaffold_562_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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24847..25533
DNA (687bp) protein (229aa)
Two-component system response regulator Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XJC7_MICPN
kdpE; two-component system response regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 16 items

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