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PLM3_60_coex_sep16_scaffold_742

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_742_1
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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3..302
DNA (300bp) protein (100aa)
Dihydroxyacetone kinase, phosphotransfer subunit Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C9M7_SPHTD
dihydroxyacetone kinase, phosphotransfer subunit
Dihydroxyacetone kinase, phosphotransfer subunit {ECO:0000313|EMBL:ACZ40520.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_60_coex_sep16_scaffold_742_2
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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305..1051
DNA (747bp) protein (249aa)
Uncharacterized protein Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6K7C2_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST27301.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
dihydroxyacetone kinase subunit DhaL
PLM3_60_coex_sep16_scaffold_742_3
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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1048..1824
DNA (777bp) protein (259aa)
Transcriptional regulator, IclR family Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q5S8_CATAD
IclR family transcriptional regulator {ECO:0000313|EMBL:ETK36654.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
IclR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_742_4
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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1861..3159
DNA (1299bp) protein (433aa)
DhbC protein {ECO:0000313|EMBL:CAN95205.1}; EC=5.4.4.2 {ECO:0000313|EMBL:CAN95205.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00036F3DD0
dhbC; hypothetical protein
PLM3_60_coex_sep16_scaffold_742_5
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(3535..4404)
DNA (870bp) protein (290aa)
Alpha/beta hydrolase fold Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NI12_ROSCS
alpha/beta hydrolase
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABU57109.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_742_6
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4415..6127)
DNA (1713bp) protein (571aa)
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01659, ECO:0000256|SAAS:SAAS00056887}; Short=SEPHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01659};; EC=2.2.1.9 {ECO:0000256|HAMAP-Rule:MF_01659, ECO:0000256|SAAS:SAAS00056850};; Menaquinone biosynthesis protein MenD {ECO:0000256|HAMAP-Rule:MF_01659}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase Tax=Nonomuraea coxensis RepID=UPI00037D4E72
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
PLM3_60_coex_sep16_scaffold_742_7
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6142..6957
DNA (816bp) protein (272aa)
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01660}; Short=SHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01660};; EC=4.2.99.20 {ECO:0000256|HAMAP-Rule:MF_01660};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
menH; putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC:4.2.99.20)
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Tax=Ilumatobacter coccineus YM16-304 RepID=M5A1N5_9ACTN
PLM3_60_coex_sep16_scaffold_742_8
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(7077..7934)
DNA (858bp) protein (286aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
1,4-dihydroxy-2-naphthoateoctaprenyltransferase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SHG1_GEOOG
1,4-dihydroxy-2-naphthoateoctaprenyltransferase
PLM3_60_coex_sep16_scaffold_742_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(7953..8765)
DNA (813bp) protein (271aa)
naphthoate synthase (EC:4.1.3.36)
dihydroxynaphthoic acid synthetase Tax=Actinoalloteichus spitiensis RepID=UPI00036F9423
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_742_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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8824..10008
DNA (1185bp) protein (395aa)
AMP-dependent synthetase and ligase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YB59_THEBD
AMP-dependent synthetase and ligase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_742_11
unknown

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comp(10005..10235)
DNA (231bp) protein (77aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_742_12
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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10401..12245
DNA (1845bp) protein (615aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
GTP pyrophosphokinase Tax=Actinopolyspora halophila RepID=UPI0003788D4D
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:EXG81308.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PLM3_60_coex_sep16_scaffold_742_13
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12267..13382)
DNA (1116bp) protein (372aa)
formamidase (EC:3.5.1.49)
Formamidase {ECO:0000313|EMBL:ABG05579.1}; EC=3.5.1.49 {ECO:0000313|EMBL:ABG05579.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Formamidase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASP9_RUBXD
PLM3_60_coex_sep16_scaffold_742_14
unknown

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13560..13694
DNA (135bp) protein (45aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_742_15
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13712..15415
DNA (1704bp) protein (568aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003716F3A
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:CCH20386.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
LuxR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_742_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

15447..16292
DNA (846bp) protein (282aa)
hypothetical protein Tax=actinobacterium SCGC AAA015-M09 RepID=UPI000364BE07
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_742_17
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(16407..16640)
DNA (234bp) protein (78aa)
Transposase Tax=Mycobacterium canettii CIPT 140070008 RepID=L0Q5L0_9MYCO
transposase
Transposase {ECO:0000313|EMBL:AJC60699.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
PLM3_60_coex_sep16_scaffold_742_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16829..17962)
DNA (1134bp) protein (378aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003721B45
Transposase {ECO:0000313|EMBL:EIM30947.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
IS110 family transposase
PLM3_60_coex_sep16_scaffold_742_19
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18117..18329)
DNA (213bp) protein (71aa)
Transposase, IS5 family Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RGJ4_MOOTA
Uncharacterized protein {ECO:0000313|EMBL:KIZ15432.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
transposase
Displaying 19 items

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