ggKbase home page

PLM3_60_coex_sep16_scaffold_815

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_815_1
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1176)
DNA (1176bp) protein (392aa)
Permease for cytosine/purines uracil thiamine allantoin Tax=Amycolatopsis mediterranei RepID=D8HKQ8_AMYMU
cytosine/purines uracil thiamine allantoin permease
Permease for cytosine/purines uracil thiamine allantoin {ECO:0000313|EMBL:AEK47693.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
PLM3_60_coex_sep16_scaffold_815_2
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

1349..2683
DNA (1335bp) protein (445aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036AD045
hypothetical protein
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3_60_coex_sep16_scaffold_815_3
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2901..3965
DNA (1065bp) protein (355aa)
Uncharacterized protein Tax=Frankia sp. EUN1f RepID=D3DAT3_9ACTO
Putative permease {ECO:0000313|EMBL:KJE21430.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_815_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

4128..5444
DNA (1317bp) protein (439aa)
Trigger factor Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C3J8_STRBB
tig; trigger factor
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_815_5

Not on your lists

5449..6084
DNA (636bp) protein (212aa)
Endopeptidase Clp (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit Tax=Candidatus Actinomarina minuta RepID=S5DLX8_9ACTN
Caseinolytic protease {ECO:0000313|EMBL:AJD73970.1}; species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
PLM3_60_coex_sep16_scaffold_815_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

6183..7454
DNA (1272bp) protein (424aa)
ATP-dependent Clp protease ATP-binding subunit ClpX Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B2Z4_FRADG
ATP-dependent Clp protease ATP-binding subunit clpX
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_815_7
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


7669..10317
DNA (2649bp) protein (883aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
valS; Valine-tRNA ligase (EC:6.1.1.9)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037425E4
PLM3_60_coex_sep16_scaffold_815_8
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10436..12049
DNA (1614bp) protein (538aa)
Uncharacterized protein Tax=Frankia sp. EUN1f RepID=D3CSM9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC86276.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_815_9
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12033..12341)
DNA (309bp) protein (103aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI000316367A
hypothetical protein
Tax=GWF1_Xanthomonadales_69_6_curated
PLM3_60_coex_sep16_scaffold_815_10
unknown

Not on your lists

comp(13279..13677)
DNA (399bp) protein (133aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_815_11
Kitasatospora griseola, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14112..15164
DNA (1053bp) protein (351aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora griseola (Streptomyces griseolosporeus).;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthetase Tax=Nocardiopsis chromatogenes RepID=UPI00037DB9D7
PLM3_60_coex_sep16_scaffold_815_12
unknown

Not on your lists

15230..15352
DNA (123bp) protein (41aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_815_13
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15612..16907
DNA (1296bp) protein (432aa)
FolC bifunctional protein Tax=Frankia sp. CN3 RepID=G6HL06_9ACTO
FolC bifunctional protein {ECO:0000313|EMBL:EFC82068.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
PLM3_60_coex_sep16_scaffold_815_14
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16963..17373
DNA (411bp) protein (137aa)
nucleoside-diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
Nucleoside diphosphate kinase Tax=Frankia sp. QA3 RepID=I9A203_9ACTO
PLM3_60_coex_sep16_scaffold_815_15
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17479..18510
DNA (1032bp) protein (344aa)
Cell shape determining protein, MreB/Mrl family Tax=Frankia sp. (strain EuI1c) RepID=E3ITW0_FRASU
MreB/Mrl family cell shape determining protein
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:ADP80007.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_815_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

18526..19392
DNA (867bp) protein (289aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI0003687ADB
Rod shape-determining protein MreC
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_815_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

19396..19896
DNA (501bp) protein (167aa)
rod shape-determining protein MreD Tax=Streptomyces sp. ScaeMP-e10 RepID=UPI000364C077
rod shape-determining protein MreD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_815_18
BJP_IG2158_Actinobacteria_57_21, Bacteria

Not on your lists

19907..21868
DNA (1962bp) protein (654aa)
penicillin-binding protein 2 (EC:2.4.1.129)
penicillin-binding protein 2 Tax=Nocardiopsis ganjiahuensis RepID=UPI00034A1581
Tax=BJP_IG2158_Actinobacteria_57_21
PLM3_60_coex_sep16_scaffold_815_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

21868..23055
DNA (1188bp) protein (396aa)
rod shape-determining protein RodA Tax=Actinomadura flavalba RepID=UPI00035EC01D
rod shape-determining protein RodA
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_815_20
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23126..23707
DNA (582bp) protein (194aa)
Transcriptional regulator, PadR-like family Tax=Frankia sp. CN3 RepID=G6HKX0_9ACTO
PadR family transcriptional regulator
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:ADP81941.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_815_21
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23704..24429
DNA (726bp) protein (242aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000361F3DB
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:KJE20431.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
ABC transporter
PLM3_60_coex_sep16_scaffold_815_22
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24426..26915
DNA (2490bp) protein (830aa)
Uncharacterized protein Tax=Frankia sp. (strain EuI1c) RepID=E3J5J5_FRASU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP81939.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_815_23
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27243..30179
DNA (2937bp) protein (979aa)
Ribonuclease E homolog {ECO:0000313|EMBL:CAJ60572.1}; EC=3.1.4.- {ECO:0000313|EMBL:CAJ60572.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Ribonuclease, Rne/Rng family Tax=Frankia sp. CN3 RepID=G6HKZ7_9ACTO
ribonuclease E-like protein
PLM3_60_coex_sep16_scaffold_815_24
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


30244..30636
DNA (393bp) protein (131aa)
50S ribosomal protein L21 Tax=Eubacterium infirmum F0142 RepID=H1PLJ1_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
rplU; 50S ribosomal protein L21
PLM3_60_coex_sep16_scaffold_815_25
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


30638..30904
DNA (267bp) protein (89aa)
50S ribosomal protein L27 Tax=Thermobifida fusca RepID=RL27_THEFY
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
rpmA; 50S ribosomal protein L27
PLM3_60_coex_sep16_scaffold_815_26
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

30928..31512
DNA (585bp) protein (195aa)
GTPase Obg Tax=Saccharomonospora marina XMU15 RepID=H5X4E4_9PSEU
obgE; GTPase ObgE
Tax=S_Thermoanaerobacterales_50_218
Displaying 26 items

View Taxonomy