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PLM3_60_coex_sep16_scaffold_844

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_844_1
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..1004)
DNA (1002bp) protein (334aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI000377FFB3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH99428.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM3_60_coex_sep16_scaffold_844_2
unknown

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1224..1511
DNA (288bp) protein (96aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_844_3
RLO_PLX_64_10, Bacteria

Not on your lists

comp(1555..2535)
DNA (981bp) protein (327aa)
alcohol dehydrogenase bin=bin8_Chloro species=Paenibacillus terrigena genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
alcohol dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_coex_sep16_scaffold_844_trna_1
unknown

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comp(2557..2629)
DNA (73bp)
transferRNA Ala
PLM3_60_coex_sep16_scaffold_844_4
unknown

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3006..3524
DNA (519bp) protein (173aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_844_5
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

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3554..4555
DNA (1002bp) protein (334aa)
ctaC; cytochrome C oxidase subunit II (EC:1.9.3.1)
Cytochrome c oxidase, subunit II bin=GWC2_Chloroflexi_73_18 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3_60_coex_sep16_scaffold_844_6
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

4570..6210
DNA (1641bp) protein (547aa)
Cytochrome c oxidase subunit I bin=GWC2_Chloroflexi_73_18 species=Rhodococcus qingshengii genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
cytochrome c oxidase subunit I type
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_844_7
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

6251..6841
DNA (591bp) protein (197aa)
cytochrome c oxidase, subunit III bin=GWC2_Chloroflexi_73_18 species=Pseudonocardia sp. P1 genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
heme/copper-type cytochrome/quinol oxidase, subunit 3
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_60_coex_sep16_scaffold_844_8
unknown

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6843..7247
DNA (405bp) protein (135aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_844_9
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(7277..7465)
DNA (189bp) protein (63aa)
id=3491635 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_844_10
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(7462..8268)
DNA (807bp) protein (269aa)
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein bin=GWC2_Chloroflexi_73_18 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3_60_coex_sep16_scaffold_844_11
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8261..9355)
DNA (1095bp) protein (365aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC 2395.;"
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00038290C4
integral membrane sensor signal transduction histidine kinase
PLM3_60_coex_sep16_scaffold_844_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9369..10070)
DNA (702bp) protein (234aa)
Two component transcriptional regulator, winged helix family Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZL3_RUBXD
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABG03165.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_844_13
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10202..11284)
DNA (1083bp) protein (361aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI00036E9525
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH11704.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_60_coex_sep16_scaffold_844_14
unknown

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comp(11546..11749)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_844_15
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11824..12093)
DNA (270bp) protein (90aa)
UPI00030873F6 related cluster Tax=unknown RepID=UPI00030873F6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETA00292.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CcI6.;"
PLM3_60_coex_sep16_scaffold_844_16
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(12128..12697)
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0C406_ACAM1
TetR family transcriptional regulator {ECO:0000313|EMBL:KIF43561.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
TetR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_844_17
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12875..13723
DNA (849bp) protein (283aa)
Helix-turn-helix domain protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F952_VERMA
Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:EWM66734.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
helix-turn-helix domain-containing protein
PLM3_60_coex_sep16_scaffold_844_18
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13915..14115
DNA (201bp) protein (67aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L7X6_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW10781.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_844_19
unknown

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comp(14185..14454)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_844_20
unknown

Not on your lists

comp(14525..15037)
DNA (513bp) protein (171aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000364ABE7
PLM3_60_coex_sep16_scaffold_844_21
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

15403..16155
DNA (753bp) protein (251aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000370C963
SARP family transcriptional regulator
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_60_coex_sep16_scaffold_844_22
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

16125..17912
DNA (1788bp) protein (596aa)
Adenylyl cyclase class-3/4/guanylyl cyclase bin=GWC2_Chloroflexi_73_18 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
adenylate/guanylate cyclase
Tax=GWC2_RIF_CHLX_73_18_curated
Displaying 23 items

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