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PLM3_60_coex_sep16_scaffold_797_3

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: comp(2438..2953)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Frankia sp. (strain EAN1pec) RepID=A8LB95_FRASN similarity UNIREF
DB: UNIREF100
  • Identity: 43.9
  • Coverage: 171.0
  • Bit_score: 122
  • Evalue 2.90e-25
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 43.9
  • Coverage: 171.0
  • Bit_score: 122
  • Evalue 8.20e-26
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABW09556.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.9
  • Coverage: 171.0
  • Bit_score: 122
  • Evalue 4.10e-25

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Taxonomy

Frankia sp. EAN1pec → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 516
GTGGGCCCCGAGGACCGGCAGTTCCCCGAGTTCTTCACCAGCCAGTACGGCCGGTTGCGCCGTCTTGGCTTCCTGCTGACCGGCGACTGGGCGCAGGCAGAGGAGCTGGCCCAGGAGGCGCTGGTCCGCGTCTACTGGCGGTGGTCGTTGGTCCGCCGGCAGGAGCACCCGGAGGCCTACGCCCGCAAGGTGCTGGTGAACCGGCACCGGTCGCTGCTGCGGCGGCTGCGCCTGGAGGCGAGACACGCCGTCCGCGACCGGGTCGAGGCGGCCGACCTCGGCCCGCGGGAGGAGCTGCTGGTGGTCCGGGCGGCCATCCGCCGGCTCCCGACCCGCCAGCGGACGGTCCTGGTCCTGCGCTACCACCAGGACCTGCCCGAGCAGGAGGTCGCCCGGCTGCTGCGGATCCCGGTGGGCACGGTCAAGTCGCTGGGCAACCGGGCCATCGCCCGCCTGCGCCGGGACCTGTCGCAGCAGCTTCCCGACCGCGCGGACAGCCGGAGGATACCCCCGTGA
PROTEIN sequence
Length: 172
VGPEDRQFPEFFTSQYGRLRRLGFLLTGDWAQAEELAQEALVRVYWRWSLVRRQEHPEAYARKVLVNRHRSLLRRLRLEARHAVRDRVEAADLGPREELLVVRAAIRRLPTRQRTVLVLRYHQDLPEQEVARLLRIPVGTVKSLGNRAIARLRRDLSQQLPDRADSRRIPP*