ggKbase home page

PLM4_32_b1_sep16_scaffold_11

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_11_1
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..728)
DNA (726bp) protein (242aa)
DNA replication and repair protein RecF Tax=Flavobacterium frigoris PS1 RepID=H7FLZ6_9FLAO
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
DNA replication and repair protein RecF
PLM4_32_b1_sep16_scaffold_11_2
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

925..2433
DNA (1509bp) protein (503aa)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI000373DF26
Uncharacterized protein {ECO:0000313|EMBL:EJG01660.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_11_3
Psychroflexus gondwanensis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2414..2890
DNA (477bp) protein (159aa)
Uncharacterized protein Tax=Psychroflexus gondwanensis ACAM 44 RepID=N1WXJ8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EMY80593.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus gondwanensis ACAM 44.;"
PLM4_32_b1_sep16_scaffold_11_4
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3979..4410
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J2SMW7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC57646.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_11_5
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4521..5093
DNA (573bp) protein (191aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase bin=GWA2_Flavobacterium_35_26 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
PLM4_32_b1_sep16_scaffold_11_6
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5378..7228
DNA (1851bp) protein (617aa)
DNA mismatch repair protein MutL Tax=Flavobacterium frigoris PS1 RepID=H7FLZ3_9FLAO
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
DNA mismatch repair protein MutL
PLM4_32_b1_sep16_scaffold_11_7
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7228..7983
DNA (756bp) protein (252aa)
Rhomboid family protein Tax=Flavobacterium frigoris PS1 RepID=H7FLZ2_9FLAO
Rhomboid family protein {ECO:0000313|EMBL:KFC59414.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
rhomboid family protein
PLM4_32_b1_sep16_scaffold_11_8
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8099..8962
DNA (864bp) protein (288aa)
Peptidase family S54, Rhomboid family protein Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FNH0_FLAJ1
Transmembrane rhomboid family protein {ECO:0000313|EMBL:KIA85168.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
rhomboid family protein
PLM4_32_b1_sep16_scaffold_11_9
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9034..10080
DNA (1047bp) protein (349aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FLZ0_9FLAO
Endonuclease {ECO:0000313|EMBL:KFC59416.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
endonuclease
PLM4_32_b1_sep16_scaffold_11_10
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10202..10825)
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FNG8_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:KFC59417.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_11_11
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10918..12474)
DNA (1557bp) protein (519aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Signal peptidase I bin=GWA2_Flavobacterium_35_26 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
signal peptidase I
PLM4_32_b1_sep16_scaffold_11_12
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12546..13253)
DNA (708bp) protein (236aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018107}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018107};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase Tax=Flavobacterium frigoris PS1 RepID=H7FLY7_9FLAO
PLM4_32_b1_sep16_scaffold_11_13
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13305..13865)
DNA (561bp) protein (187aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FLY6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC59420.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_11_14
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13865..14764)
DNA (900bp) protein (300aa)
Chromosome (Plasmid) partitioning protein ParB / Stage 0 sporulation protein J Tax=Flavobacterium frigoris PS1 RepID=H7FLY5_9FLAO
Chromosome partitioning protein ParB {ECO:0000313|EMBL:KFC59421.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
parB-like partition protein
PLM4_32_b1_sep16_scaffold_11_15
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14769..15536)
DNA (768bp) protein (256aa)
ATPase involved in chromosome partitioning Tax=Flavobacterium sp. CF136 RepID=J2K0Q5_9FLAO
Chromosome partitioning protein ParA {ECO:0000313|EMBL:KFC59422.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
cobyrinic acid a,c-diamide synthase
PLM4_32_b1_sep16_scaffold_11_16
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15972..16853)
DNA (882bp) protein (294aa)
short-chain dehydrogenase Tax=Flavobacterium sp. WG21 RepID=UPI00034797E7
Short-chain dehydrogenase {ECO:0000313|EMBL:KIC00300.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
short-chain dehydrogenase/reductase SDR
PLM4_32_b1_sep16_scaffold_11_17
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16928..18055)
DNA (1128bp) protein (376aa)
Aspartate aminotransferase Tax=Flavobacterium frigoris PS1 RepID=H7FRC9_9FLAO
Methionine aminotransferase {ECO:0000313|EMBL:KIA85141.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
class I and II aminotransferase
PLM4_32_b1_sep16_scaffold_11_18
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18346..19068)
DNA (723bp) protein (241aa)
S-adenosylmethionine-dependent methyltransferase Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002D72D60
SAM-dependent methyltransferase {ECO:0000313|EMBL:KIA85139.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
uroporphyrin-III C/tetrapyrrole methyltransferase
PLM4_32_b1_sep16_scaffold_11_19
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19108..19698)
DNA (591bp) protein (197aa)
Putative uncharacterized protein Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z382_FLABF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB68195.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
PLM4_32_b1_sep16_scaffold_11_20
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19748..20212)
DNA (465bp) protein (155aa)
Protein-tyrosine-phosphatase Tax=Flavobacterium sp. CF136 RepID=J3BZW0_9FLAO
Protein tyrosine phosphatase {ECO:0000313|EMBL:KIC00297.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
protein tyrosine phosphatase
PLM4_32_b1_sep16_scaffold_11_21
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20220..21647)
DNA (1428bp) protein (476aa)
Chromosomal replication initiator protein DnaA Tax=Flavobacterium frigoris PS1 RepID=H7FRD7_9FLAO
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
dnaA; chromosomal replication initiation protein
PLM4_32_b1_sep16_scaffold_11_22
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21832..22236
DNA (405bp) protein (135aa)
Thioesterase {ECO:0000313|EMBL:KFC59430.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Acyl-CoA thioester hydrolase, YbgC/YbaW family bin=GWA2_Flavobacterium_35_26 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
thioesterase superfamily protein
PLM4_32_b1_sep16_scaffold_11_23
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22267..22890)
DNA (624bp) protein (208aa)
Protein co-occurring with transport system () Tax=Flavobacterium frigoris PS1 RepID=H7FRD9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC59431.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_11_24
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23025..23630)
DNA (606bp) protein (202aa)
haloacid dehalogenase Tax=Flavobacterium sp. WG21 RepID=UPI0003479140
Haloacid dehalogenase {ECO:0000313|EMBL:KIA85135.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
HAD family hydrolase
PLM4_32_b1_sep16_scaffold_11_25
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23623..24666)
DNA (1044bp) protein (348aa)
Riboflavin biosynthesis protein RibD Tax=Flavobacterium frigoris PS1 RepID=H7FRE1_9FLAO
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
riboflavin biosynthesis protein RibD
PLM4_32_b1_sep16_scaffold_11_26
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24773..25258
DNA (486bp) protein (162aa)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI00030EC77F
Uncharacterized protein {ECO:0000313|EMBL:KFC59434.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
N-acetyltransferase GCN5
PLM4_32_b1_sep16_scaffold_11_27
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25340..26197
DNA (858bp) protein (286aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
glutamine methyltransferase Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002F98F4F
HemK family modification methylase
PLM4_32_b1_sep16_scaffold_11_28
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26278..26637)
DNA (360bp) protein (120aa)
S23 ribosomal protein Tax=Flavobacterium sp. CF136 RepID=J2JBA3_9FLAO
S23 ribosomal protein {ECO:0000313|EMBL:KGO96269.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
S23 ribosomal protein
PLM4_32_b1_sep16_scaffold_11_29
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26742..27986)
DNA (1245bp) protein (415aa)
ABC transporter permease {ECO:0000313|EMBL:KFC59436.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ABC transporter, permease protein bin=GWA2_Flavobacterium_35_26 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
hypothetical protein
PLM4_32_b1_sep16_scaffold_11_30
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


28346..29716
DNA (1371bp) protein (457aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase Tax=Flavobacterium frigoris PS1 RepID=H7FRE5_9FLAO
Displaying items 1-30 of 92 in total

View Taxonomy