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PLM4_32_b1_sep16_scaffold_223

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_223_1
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3..500
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Flavobacterium sp. CF136 RepID=J2JH88_9FLAO
Dioxygenase {ECO:0000313|EMBL:KIA86623.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_2
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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439..666
DNA (228bp) protein (76aa)
aromatic ring-cleaving dioxygenase Tax=Flavobacterium sp. WG21 RepID=UPI00034D14F5
Dioxygenase {ECO:0000313|EMBL:KIA86623.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_3
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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990..1676
DNA (687bp) protein (229aa)
hypothetical protein Tax=Flavobacterium sp. WG21 RepID=UPI00034AC630
Acetyltransferase {ECO:0000313|EMBL:KIA87779.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
gcn5-related n-acetyltransferase
PLM4_32_b1_sep16_scaffold_223_4
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1751..2479
DNA (729bp) protein (243aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
3-deoxy-manno-octulosonate cytidylyltransferase Tax=Flavobacterium frigoris PS1 RepID=H7FV86_9FLAO
3-deoxy-D-manno-octulosonate cytidylyltransferase
PLM4_32_b1_sep16_scaffold_223_5
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(2554..3219)
DNA (666bp) protein (222aa)
Spermidine synthase-like protein Tax=Flavobacterium frigoris PS1 RepID=H7FV73_9FLAO
Spermidine synthase-like protein {ECO:0000313|EMBL:KFC58645.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
spermine synthase
PLM4_32_b1_sep16_scaffold_223_6
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3282..3836
DNA (555bp) protein (185aa)
acyltransferase Tax=Flavobacterium sp. ACAM 123 RepID=UPI0003135F92
Acyltransferase {ECO:0000313|EMBL:KFC58644.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
putative acyltransferase
PLM4_32_b1_sep16_scaffold_223_7
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(4008..4484)
DNA (477bp) protein (159aa)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002E3F6EA
DNA-binding protein {ECO:0000313|EMBL:KIA86655.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
bacteriophage CI repressor
PLM4_32_b1_sep16_scaffold_223_8
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4795..5949
DNA (1155bp) protein (385aa)
Putative carboxypeptidase Tax=Flavobacterium sp. CF136 RepID=J2JAU5_9FLAO
Strain DSM 12611 Contig10, whole genome shotgun sequence {ECO:0000313|EMBL:KIO52483.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
peptidase M14, carboxypeptidase A
PLM4_32_b1_sep16_scaffold_223_9
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6028..6507
DNA (480bp) protein (160aa)
Transcriptional regulator {ECO:0000313|EMBL:KIA86657.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
Transcriptional regulator, AsnC family protein bin=GWA2_Flavobacterium_35_26 species=unknown genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
AsnC family transcriptional regulator
PLM4_32_b1_sep16_scaffold_223_10
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6602..9187
DNA (2586bp) protein (862aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase bin=GWA2_Flavobacterium_35_26 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
PLM4_32_b1_sep16_scaffold_223_11
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9246..9761
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Flavobacterium sp. F52 RepID=J1KML8_9FLAO
Damage-inducible protein DinB {ECO:0000313|EMBL:KIA86659.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_12
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(9763..10242)
DNA (480bp) protein (160aa)
G:T/U mismatch-specific uracil/thymine DNA-glycosylase Tax=Flavobacterium frigoris PS1 RepID=H7FV66_9FLAO
Thymine DNA-glycosylase {ECO:0000313|EMBL:KIA86660.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
Uracil DNA glycosylase superfamily protein
PLM4_32_b1_sep16_scaffold_223_13
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10249..12360)
DNA (2112bp) protein (704aa)
ATP-dependent DNA helicase RecQ Tax=Flavobacterium sp. CF136 RepID=J3BWN0_9FLAO
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:KIA86661.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
ATP-dependent DNA helicase RecQ
PLM4_32_b1_sep16_scaffold_223_14
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(12447..12839)
DNA (393bp) protein (131aa)
primase Tax=Flavobacterium sp. WG21 RepID=UPI000346515E
Uncharacterized protein {ECO:0000313|EMBL:KFC59094.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_15
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12849..13820)
DNA (972bp) protein (324aa)
Deoxyhypusine synthase bin=GWA2_Flavobacterium_35_26 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
Deoxyhypusine synthase {ECO:0000313|EMBL:KIA86663.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_16
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13924..15327)
DNA (1404bp) protein (468aa)
Arginine decarboxylase {ECO:0000256|SAAS:SAAS00212226}; EC=4.1.1.19 {ECO:0000256|SAAS:SAAS00212226};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Orn/DAP/Arg decarboxylase 2 bin=GWA2_Flavobacterium_35_26 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
Orn/DAP/Arg decarboxylase 2
PLM4_32_b1_sep16_scaffold_223_17
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(15620..16687)
DNA (1068bp) protein (356aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase Tax=Flavobacterium frigoris PS1 RepID=H7FV61_9FLAO
PLM4_32_b1_sep16_scaffold_223_18
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16780..17949
DNA (1170bp) protein (390aa)
proline dehydrogenase Tax=Flavobacterium sp. WG21 RepID=UPI000346CFF8
Proline dehydrogenase {ECO:0000313|EMBL:KFC59088.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
proline dehydrogenase
PLM4_32_b1_sep16_scaffold_223_19
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18053..19840)
DNA (1788bp) protein (596aa)
ABC transporter-like protein Tax=Flavobacterium sp. F52 RepID=J0RUE1_9FLAO
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:KFC59087.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ABC transporter-like protein
PLM4_32_b1_sep16_scaffold_223_trna_1
unknown

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20057..20131
DNA (75bp)
transferRNA Val
PLM4_32_b1_sep16_scaffold_223_20
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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20489..20704
DNA (216bp) protein (72aa)
Transposase Tax=Flavobacterium frigoris PS1 RepID=H7FSU0_9FLAO
Transposase {ECO:0000313|EMBL:EIA08649.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_21
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21073..22557
DNA (1485bp) protein (495aa)
pepP; Xaa-Pro aminopeptidase (EC:3.4.11.9)
hypothetical protein Tax=Flavobacterium sp. ACAM 123 RepID=UPI000377EBE7
Peptidase M24 {ECO:0000313|EMBL:KIA86797.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
PLM4_32_b1_sep16_scaffold_223_22
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22626..23363)
DNA (738bp) protein (246aa)
Putative uncharacterized protein Tax=Flavobacterium frigoris PS1 RepID=H7FVE5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC57657.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
ATP-binding protein
PLM4_32_b1_sep16_scaffold_223_23
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23459..24208
DNA (750bp) protein (250aa)
Transposase Tax=Flavobacterium sp. CF136 RepID=J2IZF5_9FLAO
Transposase {ECO:0000313|EMBL:EJL61245.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_24
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24211..26274
DNA (2064bp) protein (688aa)
Aminopeptidase Tax=Flavobacterium frigoris PS1 RepID=H7FVE4_9FLAO
Aminopeptidase {ECO:0000313|EMBL:KFC57658.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
peptidase M1, membrane alanine aminopeptidase
PLM4_32_b1_sep16_scaffold_223_25
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26499..27020)
DNA (522bp) protein (174aa)
Uncharacterized protein Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FFS7_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:KFC57660.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_223_26
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27256..27858
DNA (603bp) protein (201aa)
Membrane protein {ECO:0000313|EMBL:KFC57661.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Membrane protein, putative bin=GWA2_Flavobacterium_35_26 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
hypothetical protein
Displaying 27 items

View Taxonomy