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PLM4_32_b1_sep16_scaffold_923

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_923_1
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..557)
DNA (555bp) protein (185aa)
Elongation factor Tu Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PPI5_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
translation elongation factor 1A (EF-1A/EF-Tu)
PLM4_32_b1_sep16_scaffold_923_trna_4
unknown

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comp(620..692)
DNA (73bp)
transferRNA Thr
PLM4_32_b1_sep16_scaffold_923_trna_3
unknown

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comp(734..807)
DNA (74bp)
transferRNA Gly
PLM4_32_b1_sep16_scaffold_923_trna_2
unknown

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comp(833..915)
DNA (83bp)
transferRNA Tyr
PLM4_32_b1_sep16_scaffold_923_trna_1
unknown

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comp(1107..1178)
DNA (72bp)
transferRNA Thr
PLM4_32_b1_sep16_scaffold_923_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1339..2772)
DNA (1434bp) protein (478aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cysS; cysteinyl-tRNA ligase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_923_3
RLO_PLX_64_10, Bacteria

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comp(2870..3859)
DNA (990bp) protein (330aa)
D-alanine--D-alanine ligase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AB50_THECD
D-alanine/D-alanine ligase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_923_4
unknown

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comp(3997..4488)
DNA (492bp) protein (164aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_923_5
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4713..5345)
DNA (633bp) protein (211aa)
hypothetical protein Tax=Deinococcus apachensis RepID=UPI00036BC6A4
RhtB family transporter {ECO:0000313|EMBL:EZQ17557.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
RhtB family transporter
PLM4_32_b1_sep16_scaffold_923_6
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5354..6565)
DNA (1212bp) protein (404aa)
Major facilitator superfamily MFS_1 transporter Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IFW6_ANADE
major facilitator transporter
Major facilitator superfamily MFS_1 transporter {ECO:0000313|EMBL:ABC83475.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM4_32_b1_sep16_scaffold_923_7
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6581..7117)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UCM2_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC45342.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM4_32_b1_sep16_scaffold_923_8
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7114..7911)
DNA (798bp) protein (266aa)
ABC-type Co2+ transport system periplasmic component-like protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RMD8_ACCPU
Co2+ ABC transporter periplasmic component-like protein
ABC-type Co2+ transport system periplasmic component-like protein {ECO:0000313|EMBL:ACV37216.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
PLM4_32_b1_sep16_scaffold_923_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(7908..9347)
DNA (1440bp) protein (480aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WRP6_BACT2 bin=16ft_combo_ws3_JS1 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_923_10
RIFOXYD12_FULL_Planctomycetes_42_12_curated, Planctomycetes, Bacteria

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comp(9427..9942)
DNA (516bp) protein (172aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase
Tax=RIFOXYD12_FULL_Planctomycetes_42_12_curated
PLM4_32_b1_sep16_scaffold_923_11
R_Nitrospirae_66_17, Nitrospirae, Bacteria

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comp(9939..10643)
DNA (705bp) protein (235aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Frankia sp. Iso899 RepID=UPI0003B75E2D
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_32_b1_sep16_scaffold_923_12
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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comp(10650..11546)
DNA (897bp) protein (299aa)
Mce-like protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Leeuwenhoekiella blandensis genus=Leeuwenhoekiella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
mammalian cell entry domain-containing protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_b1_sep16_scaffold_923_13
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

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comp(11543..12304)
DNA (762bp) protein (254aa)
Ribonucleotide ABC transporter ATP-binding protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MQN0_9BACT
ABC transporter-like protein
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
PLM4_32_b1_sep16_scaffold_923_14
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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comp(12301..13041)
DNA (741bp) protein (247aa)
Putative ABC transport system permease protein; K02066 putative ABC transport system permease protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_b1_sep16_scaffold_923_15
CG_CP01_01, CG_CP01, Bacteria

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comp(13059..14426)
DNA (1368bp) protein (456aa)
Replicative DNA helicase Tax=Thermincola potens (strain JR) RepID=D5XDQ5_THEPJ
replicative DNA helicase
Tax=CG_CP01_01
PLM4_32_b1_sep16_scaffold_923_16
unknown

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comp(14699..15025)
DNA (327bp) protein (109aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_923_17
unknown

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15273..15464
DNA (192bp) protein (64aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_923_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(15699..16160)
DNA (462bp) protein (154aa)
Bll0454 protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_923_19
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16198..16851)
DNA (654bp) protein (218aa)
Bacteriophage-type DNA polymerase bin=GWC2_Ignavibacteria_56_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
phage SPO1 DNA polymerase-like protein
Tax=RBG_16_Gamma2_60_9_curated
PLM4_32_b1_sep16_scaffold_923_20
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(16989..18197)
DNA (1209bp) protein (403aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EET5_THECK
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:AGA58307.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
PLM4_32_b1_sep16_scaffold_923_21
unknown

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comp(18310..18558)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_923_22
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(18597..19208)
DNA (612bp) protein (204aa)
guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
Guanylate kinase Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S307_THEOJ
PLM4_32_b1_sep16_scaffold_923_23
unknown

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comp(19213..19284)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 27 items

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