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PLM4_32_b1_sep16_scaffold_4576

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_4576_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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2..226
DNA (225bp) protein (75aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase,HAMP domain-containing protein,histidine kinase,cache domain-containing protein,GAF domain-containing protein bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_32_b1_sep16_scaffold_4576_2
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

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305..1222
DNA (918bp) protein (306aa)
Putative uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
luciferase-like monooxygenase
Tax=GWA2_Elusimicrobia_69_24_curated
PLM4_32_b1_sep16_scaffold_4576_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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1424..2233
DNA (810bp) protein (270aa)
Two-component hybrid sensor and regulator bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PAS domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_4576_4
RBG_16_NC10_65_8_curated, NC10, Bacteria

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2423..3649
DNA (1227bp) protein (409aa)
Transposase Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y8H6_THIV6
Transposase, IS4 family
Tax=RBG_16_NC10_65_8_curated
PLM4_32_b1_sep16_scaffold_4576_5
unknown

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comp(3878..4228)
DNA (351bp) protein (117aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_4576_6
unknown

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comp(4448..4666)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_4576_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4663..5412)
DNA (750bp) protein (250aa)
Formyl-CoA transferase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_4576_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5731..6381)
DNA (651bp) protein (217aa)
msrA; methionine-s-sulfoxide reductase; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
msrA2; methionine sulfoxide reductase A
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_4576_9
R_NC10_66_22, NC10, Bacteria

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6453..7358
DNA (906bp) protein (302aa)
dihydrodipicolinate synthase (EC:4.2.1.52)
glucose dehydrogenase Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B751CB
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_b1_sep16_scaffold_4576_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7355..7993
DNA (639bp) protein (213aa)
Haloacid dehalogenase-like hydrolase, putative bin=GWA2_Methylomirabilis_73_35 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Hydrolase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_4576_11
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8064..8690)
DNA (627bp) protein (209aa)
Monofunctional biosynthetic peptidoglycan transglycosylase Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B1G0_PELLD
monofunctional biosynthetic peptidoglycan transglycosylase
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM4_32_b1_sep16_scaffold_4576_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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8715..9881
DNA (1167bp) protein (389aa)
Peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_4576_13
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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9878..11515
DNA (1638bp) protein (546aa)
TRAP transporter solute receptor, TAXI family Tax=Beggiatoa sp. PS RepID=A7C0T5_9GAMM
TRAP transporter solute receptor, TAXI family {ECO:0000313|EMBL:EDN67599.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_4576_14
unknown

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11611..11865
DNA (255bp) protein (85aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_4576_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(11913..12800)
DNA (888bp) protein (296aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_4576_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(13199..13495)
DNA (297bp) protein (99aa)
organic solvent tolerance ABC transporter, periplasmic substrate-binding protein; K07323 putative toluene tolerance protein bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
organic solvent tolerance ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Displaying 16 items

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