ggKbase home page

PLM4_32_b1_sep16_scaffold_2267

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_2267_1
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..178
DNA (177bp) protein (59aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALE20 RepID=UPI0003740C63
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADC72288.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
PLM4_32_b1_sep16_scaffold_2267_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

216..713
DNA (498bp) protein (166aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_2267_3
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(779..1540)
DNA (762bp) protein (254aa)
Biotin biosynthesis cytochrome P450 Tax=Nitrolancetus hollandicus Lb RepID=I4EKT4_9CHLR
cytochrome P450
Tax=RBG_16_Chloroflexi_68_14_curated
PLM4_32_b1_sep16_scaffold_2267_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1549..1794)
DNA (246bp) protein (82aa)
cytochrome P450 (EC:1.14.-.-)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI00034D573C
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_32_b1_sep16_scaffold_2267_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1802..2797)
DNA (996bp) protein (332aa)
Beta-lactamase-like protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQZ0_KORVE
Uncharacterized protein {ECO:0000313|EMBL:ETW97553.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
beta-lactamase-like protein
PLM4_32_b1_sep16_scaffold_2267_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

2869..4260
DNA (1392bp) protein (464aa)
fumC; fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II bin=GWF2_Methylomirabilis_70_14 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_b1_sep16_scaffold_2267_7
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4402..4902)
DNA (501bp) protein (167aa)
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EVT87374.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA09.;"
PLM4_32_b1_sep16_scaffold_2267_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4977..5429
DNA (453bp) protein (151aa)
Chromate transporter Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMD7_NITHX
chromate transporter
Chromate transporter {ECO:0000313|EMBL:ABE62610.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PLM4_32_b1_sep16_scaffold_2267_9
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(5442..8402)
DNA (2961bp) protein (987aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CG_Arma_02
PLM4_32_b1_sep16_scaffold_2267_10
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(8390..10144)
DNA (1755bp) protein (585aa)
hypothetical protein Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00037A4F79
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:ACZ41363.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM4_32_b1_sep16_scaffold_2267_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10275..10814)
DNA (540bp) protein (180aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_32_b1_sep16_scaffold_2267_12
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11017..12030
DNA (1014bp) protein (338aa)
TRAP dicarboxylate transporter, DctP subunit Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TTZ1_ALKMQ
TRAP dicarboxylate transporter subunit DctP
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM4_32_b1_sep16_scaffold_2267_13
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12034..12372
DNA (339bp) protein (113aa)
TRAP C4-dicarboxylate transport system permease DctM Tax=Hydrogenophaga sp. PBC RepID=I4MNM6_9BURK
putative TRAP dicarboxylate transporter DctM and DctQ subunit
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM4_32_b1_sep16_scaffold_2267_14
unknown

Not on your lists

12372..12494
DNA (123bp) protein (41aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_2267_15
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12491..13771
DNA (1281bp) protein (427aa)
TRAP-type C4-dicarboxylate transport system, large permease component bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM4_32_b1_sep16_scaffold_2267_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13814..13948
DNA (135bp) protein (45aa)
Propanoyl-CoA C-acyltransferase bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium rhodesiae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2267_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14011..14370
DNA (360bp) protein (120aa)
id=4117858 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_2267_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14367..15149
DNA (783bp) protein (261aa)
sat:SYN_01020 Sir2 family NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
sir2 family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_2267_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15152..15919
DNA (768bp) protein (256aa)
4-oxalocrotonate decarboxylase (EC:4.1.1.77)
2-hydroxypent-2,4-dienoate hydratase (Protein belongs to CMGI-2) bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2267_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15954..16559
DNA (606bp) protein (202aa)
Coenzyme A pyrophosphatase bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA mismatch repair protein MutT
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2267_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16857..17465
DNA (609bp) protein (203aa)
id=3526414 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2267_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17462..18304
DNA (843bp) protein (281aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_2267_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18309..19700
DNA (1392bp) protein (464aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2267_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

19933..20262
DNA (330bp) protein (110aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
AAA domain family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 24 items

View Taxonomy