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PLM4_32_b1_sep16_scaffold_586

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_586_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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2..1174
DNA (1173bp) protein (391aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase bin=GWC2_Methylomirabilis_70_24 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1171..3087
DNA (1917bp) protein (639aa)
aldehyde:ferredoxin oxidoreductase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin7_NC10_sister organism_group=NC10
aldehyde:ferredoxin oxidoreductase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3105..3431
DNA (327bp) protein (109aa)
id=4895587 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3592..4758)
DNA (1167bp) protein (389aa)
Acetylornithine aminotransferase bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rocD; Ornithine aminotransferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4755..5231)
DNA (477bp) protein (159aa)
Histone acetyltransferase HPA2/related acetyltransferase bin=GWF2_Methylomirabilis_70_14 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GCN5-related N-acetyltransferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5258..5449)
DNA (192bp) protein (64aa)
Arginine repressor bin=GWF2_Methylomirabilis_70_14 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arginine repressor ArgR
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5446..5655)
DNA (210bp) protein (70aa)
Arginine repressor bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
argR; arginine repressor ArgR
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_586_8
unknown

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5755..6327
DNA (573bp) protein (191aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_586_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6263..8476)
DNA (2214bp) protein (738aa)
anthranilate synthase subunit I (EC:4.1.3.27)
Anthranilate synthase {ECO:0000313|EMBL:CAN95207.1}; EC=4.1.3.27 {ECO:0000313|EMBL:CAN95207.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Anthranilate synthase Tax=Sorangium cellulosum (strain So ce56) RepID=A9FLF1_SORC5
PLM4_32_b1_sep16_scaffold_586_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8799..9689
DNA (891bp) protein (297aa)
2-hydroxy-3-oxopropionate reductase bin=GWF2_Methylomirabilis_70_14 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-hydroxy-3-oxopropionate reductase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_586_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9686..10714
DNA (1029bp) protein (343aa)
putative acetyltransferase bin=GWF2_Methylomirabilis_70_14 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GCN5-related N-acetyltransferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10720..11112
DNA (393bp) protein (131aa)
Copper resistance protein CopC bin=GWC2_Methylomirabilis_70_16 species=Nitrosococcus watsonii genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
copper resistance protein CopC
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_586_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11117..12766
DNA (1650bp) protein (550aa)
Copper resistance D domain protein bin=GWC2_Methylomirabilis_70_16 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
copper resistance D domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_586_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12766..13848
DNA (1083bp) protein (361aa)
Predicted protein bin=GWF2_Methylomirabilis_70_14 species=Physcomitrella patens genus=Physcomitrella taxon_order=Funariales taxon_class=Bryopsida phylum=Streptophyta tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADP-dependent oxidoreductase domain protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13907..14668
DNA (762bp) protein (254aa)
methylmalonyl-CoA epimerase (EC:4.4.1.5)
Lactoylglutathione lyase and related lyases bin=GWC2_Methylomirabilis_70_24 species=uncultured Chloroflexi bacterium HF0200_09I09 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_16
RLO_PLX_64_10, Bacteria

Not on your lists

14679..15467
DNA (789bp) protein (263aa)
3-ketoacyl-ACP reductase Tax=Paenibacillus mucilaginosus RepID=I0BR71_9BACL
putative short-chain dehydrogenase/reductase YusR
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_586_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

15469..15879
DNA (411bp) protein (137aa)
id=3030719 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_586_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15828..17087)
DNA (1260bp) protein (420aa)
Major facilitator superfamily MFS_1 bin=GWC2_Methylomirabilis_70_16 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
major facilitator superfamily protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_586_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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17178..19163
DNA (1986bp) protein (662aa)
Putative molybdopterin oxidoreductase bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin oxidoreductase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_586_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19163..19936
DNA (774bp) protein (258aa)
Putative 2-oxoglutarate-Fe(II) oxygenase superfamily bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative 2-oxoglutarate-Fe(II) oxygenase superfamily
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_586_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19957..20892
DNA (936bp) protein (312aa)
mls; malate synthase (EC:2.3.3.9)
Malate synthase bin=GWC2_Methylomirabilis_70_16 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 21 items

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