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PLM4_32_b1_sep16_scaffold_806

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_806_1
unknown

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comp(1..1182)
DNA (1182bp) protein (394aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_806_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1202..4867
DNA (3666bp) protein (1222aa)
multi-sensor signal transduction histidine kinase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_806_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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4864..5937
DNA (1074bp) protein (358aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_806_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6136..7011
DNA (876bp) protein (292aa)
Transcriptional regulator, GntR family with UTRA sensor domain bin=GWC2_Methylomirabilis_70_16 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GntR family transcriptional regulator
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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7102..7881
DNA (780bp) protein (260aa)
Electron transfer flavoprotein, beta subunit bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
electron transfer flavoprotein beta-subunit
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_806_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7959..8975
DNA (1017bp) protein (339aa)
Electron transfer flavoprotein, alpha subunit bin=GWF2_Methylomirabilis_70_14 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
etfA3; electron transfer flavoprotein subunit alpha
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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9076..10233
DNA (1158bp) protein (386aa)
Acyl-CoA dehydrogenase domain protein bin=GWF2_Methylomirabilis_70_14 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_806_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10250..11917
DNA (1668bp) protein (556aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11932..12999
DNA (1068bp) protein (356aa)
Branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase bin=GWF2_Methylomirabilis_70_14 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13013..13426
DNA (414bp) protein (138aa)
Histidine triad (HIT) protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
histidine triad (HIT) protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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13426..13833
DNA (408bp) protein (136aa)
Cobalamin B12-binding domain protein bin=GWC2_Methylomirabilis_70_24 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cobalamin B12-binding domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13902..14894
DNA (993bp) protein (331aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_806_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14899..15687
DNA (789bp) protein (263aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyacyl-CoA dehydrogenase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_14
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15684..16469
DNA (786bp) protein (262aa)
Putative branched-chain amino acid transport system ATP-binding protein Tax=Azospirillum brasilense Sp245 RepID=G8ALP0_AZOBR
amino acid ABC transporter ATP-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_32_b1_sep16_scaffold_806_15
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16823..17020
DNA (198bp) protein (66aa)
ABC-type branched-chain amino acid transport system, ATPase component Tax=Bradyrhizobium sp. WSM471 RepID=H5YFY2_9BRAD
ABC transporter ATP-binding protein
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EHR02800.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
PLM4_32_b1_sep16_scaffold_806_16
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17063..18271
DNA (1209bp) protein (403aa)
ABC transporter substrate-binding protein Tax=Hydrogenophaga sp. PBC RepID=I4MIJ8_9BURK
ABC transporter substrate-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_32_b1_sep16_scaffold_806_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18353..19258
DNA (906bp) protein (302aa)
ABC transporter permease Tax=Chelatococcus sp. GW1 RepID=UPI0003701C0D
inner-membrane translocator
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19258..20238
DNA (981bp) protein (327aa)
Branched-chain amino acid ABC transporter, permease protein bin=GWF2_Methylomirabilis_70_14 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(20222..20575)
DNA (354bp) protein (118aa)
id=14627240 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM4_32_b1_sep16_scaffold_806_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20862..22802
DNA (1941bp) protein (647aa)
acS2; putative Acetyl-coenzyme A synthetase (EC:6.2.1.1)
AMP-forming long-chain acyl-CoA synthetase bin=GWC2_Methylomirabilis_70_24 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_806_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

22799..23584
DNA (786bp) protein (262aa)
ABC-type branched-chain amino acid transport systems, ATPase component Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G5ZZ04_9PROT
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_806_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

23597..24532
DNA (936bp) protein (312aa)
hypothetical protein Tax=Novispirillum itersonii RepID=UPI00036CE0C1
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_806_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24536..25612
DNA (1077bp) protein (359aa)
Branched-chain amino acid transport system permease protein LivM Tax=Caenispirillum salinarum AK4 RepID=K9GWM9_9PROT
livM; high-affinity branched-chain amino acid transport system permease livM
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_32_b1_sep16_scaffold_806_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25594..26958
DNA (1365bp) protein (455aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_806_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

26974..27789
DNA (816bp) protein (272aa)
Branched-chain amino acid ABC transporter ATPase bin=GWA2_Methylomirabilis_73_35 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livF1; branched-chain amino acid ABC transporter ATPase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_32_b1_sep16_scaffold_806_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27800..28591
DNA (792bp) protein (264aa)
ABC transporter related protein bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_32_b1_sep16_scaffold_806_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28584..30377
DNA (1794bp) protein (598aa)
AMP-dependent synthetase and ligase (EC:6.2.1.3)
Putative long-chain-fatty-acid--CoA ligase Tax=mine drainage metagenome RepID=E6PNQ5_9ZZZZ
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_32_b1_sep16_scaffold_806_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

30370..31266
DNA (897bp) protein (299aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anoxybacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter permease
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_806_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

31269..33134
DNA (1866bp) protein (622aa)
ABC-type branched-chain amino acid transport system, periplasmic component bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter membrane protein 2, HAAT family
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 29 items

View Taxonomy