ggKbase home page

PLM4_32_b1_sep16_scaffold_4881

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_4881_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..501)
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=Collimonas fungivorans (strain Ter331) RepID=G0AB75_COLFT
Protein of unknown function DUF4386
Uncharacterized protein {ECO:0000313|EMBL:AHG93422.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_4881_2
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(498..734)
DNA (237bp) protein (79aa)
Transcriptional regulator Tax=Erythrobacter sp. SD-21 RepID=A5PA96_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EDL49151.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
helix-turn-helix domain protein
PLM4_32_b1_sep16_scaffold_4881_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(737..1255)
DNA (519bp) protein (173aa)
hypothetical protein Tax=Sphingomonas echinoides RepID=UPI00026CDBA0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93424.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_4881_4
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1628..2704
DNA (1077bp) protein (359aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI0003707A12
DNA polymerase IV {ECO:0000313|EMBL:KIH77248.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
DNA polymerase IV subunit kappa
PLM4_32_b1_sep16_scaffold_4881_5

Not on your lists

comp(2614..3375)
DNA (762bp) protein (254aa)
NAD(P)H quinone oxidoreductase, PIG3 family Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LWL1_HALO1
NAD(P)H quinone oxidoreductase {ECO:0000313|EMBL:AHN97968.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
NAD(P)H quinone oxidoreductase
PLM4_32_b1_sep16_scaffold_4881_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

3643..4125
DNA (483bp) protein (161aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_32_b1_sep16_scaffold_4881_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4155..4544
DNA (390bp) protein (130aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Rhodanobacter sp. 115 RepID=I4VVL5_9GAMM
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_b1_sep16_scaffold_4881_8

Not on your lists

4546..5082
DNA (537bp) protein (179aa)
Putative methyladenine glycosylase protein Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UEP5_XANAP
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:AHN97964.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
methyladenine glycosylase
PLM4_32_b1_sep16_scaffold_4881_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(5171..6955)
DNA (1785bp) protein (595aa)
hypothetical protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_32_b1_sep16_scaffold_4881_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(6952..7500)
DNA (549bp) protein (183aa)
hypothetical protein; K03744 LemA protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_32_b1_sep16_scaffold_4881_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(7542..8471)
DNA (930bp) protein (310aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003682A8B
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_32_b1_sep16_scaffold_4881_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8468..9649)
DNA (1182bp) protein (394aa)
outer membrane protein/protective antigen OMA87 bin=CNBR_ACIDO species=Echinicola pacifica genus=Echinicola taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
surface antigen (D15)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_32_b1_sep16_scaffold_4881_13
unknown

Not on your lists

comp(9900..10400)
DNA (501bp) protein (167aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_4881_14

Not on your lists

10486..12930
DNA (2445bp) protein (815aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III subunit alpha Tax=Desulfospira joergensenii RepID=UPI0003B4D5AC
PLM4_32_b1_sep16_scaffold_4881_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13015..13500
DNA (486bp) protein (162aa)
WD40-like beta Propeller containing protein Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L6A8_HALH1
peptidase S41
Peptidase S41 {ECO:0000313|EMBL:AHG89708.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_4881_16

Not on your lists

13525..14055
DNA (531bp) protein (177aa)
Putative uncharacterized protein Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIS0_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89242.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
PLM4_32_b1_sep16_scaffold_4881_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

14069..15253
DNA (1185bp) protein (395aa)
h16_A1828; glucose/sorbosone dehydrogenase (EC:1.1.1.-)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_b1_sep16_scaffold_4881_18

Not on your lists

15263..15658
DNA (396bp) protein (132aa)
Conserved protein Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR8_9BACT
Conserved protein {ECO:0000313|EMBL:AHN97952.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_4881_19

Not on your lists

15646..16152
DNA (507bp) protein (169aa)
Conserved protein Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR8_9BACT
Conserved protein {ECO:0000313|EMBL:AHN97952.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_4881_20
unknown

Not on your lists

comp(16143..16448)
DNA (306bp) protein (102aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_4881_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

16621..17178
DNA (558bp) protein (186aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_32_b1_sep16_scaffold_4881_22
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17307..17744
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3V6_GEMAT
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
PLM4_32_b1_sep16_scaffold_4881_23

Not on your lists

comp(17748..18968)
DNA (1221bp) protein (407aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR7_9BACT
hydroxymethylbutenyl pyrophosphate reductase
Displaying 23 items

View Taxonomy