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PLM4_32_coex_redo_sep16_scaffold_5374

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_5374_1
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1..219)
DNA (219bp) protein (73aa)
Nucleoid-associated protein Theco_3532 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EIN7_THECK
YbaB/EbfC family DNA-binding protein
Nucleoid-associated protein Theco_3532 {ECO:0000256|HAMAP-Rule:MF_00274}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
PLM4_32_coex_redo_sep16_scaffold_5374_2
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(216..1778)
DNA (1563bp) protein (521aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III subunit gamma/tau Tax=uncultured Acidobacteria bacterium RepID=H5SPN5_9BACT
DNA polymerase III subunit gamma/tau {ECO:0000313|EMBL:BAL58121.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
PLM4_32_coex_redo_sep16_scaffold_5374_trna_3
unknown

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comp(1926..2012)
DNA (87bp)
transferRNA Ser
PLM4_32_coex_redo_sep16_scaffold_5374_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2003..2614)
DNA (612bp) protein (204aa)
tRNA-specific adenosine-34 deaminase (EC:3.5.4.-)
CMP/dCMP deaminase zinc-binding protein bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_coex_redo_sep16_scaffold_5374_trna_2
unknown

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comp(2040..2129)
DNA (90bp)
transferRNA Ser
PLM4_32_coex_redo_sep16_scaffold_5374_trna_1
unknown

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comp(2644..2717)
DNA (74bp)
transferRNA Arg
PLM4_32_coex_redo_sep16_scaffold_5374_4
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2915..3538
DNA (624bp) protein (208aa)
Response regulator bin=GWC2_Deltaproteobacteria_55_46 species=Neptuniibacter caesariensis genus=Neptuniibacter taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
two component system response regulator
Tax=GWC2_Deltaproteobacteria_55_46b_curated
PLM4_32_coex_redo_sep16_scaffold_5374_5
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3763..4362
DNA (600bp) protein (200aa)
sugar ABC transporter substrate-binding protein Tax=Thermodesulfatator atlanticus RepID=UPI0003B71969
polysaccharide export protein
Tax=RBG_16_Gamma2_60_9_curated
PLM4_32_coex_redo_sep16_scaffold_5374_6
unknown

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4352..5554
DNA (1203bp) protein (401aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_5374_7
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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5565..7061
DNA (1497bp) protein (499aa)
Lipopolysaccharide biosynthesis protein bin=GWA2_OP3_52_12 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
gumC1; lipopolysaccharide biosynthesis protein
Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
PLM4_32_coex_redo_sep16_scaffold_5374_8
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

7344..7814
DNA (471bp) protein (157aa)
Capsular exopolysaccharide family protein (Fragment) bin=GWC2_OP3-like_45_7 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
wzc; non-specific protein-tyrosine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_32_coex_redo_sep16_scaffold_5374_9
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7811..8848
DNA (1038bp) protein (346aa)
hypothetical protein Tax=Sulfobacillus thermosulfidooxidans RepID=UPI000303683F
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_5374_10
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

Not on your lists

8845..10761
DNA (1917bp) protein (639aa)
Polysaccharide biosynthesis protein CapD Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JCM9_ANAD2
polysaccharide biosynthesis protein CapD
Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
PLM4_32_coex_redo_sep16_scaffold_5374_11
unknown

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10758..11006
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_5374_12
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

11014..12054
DNA (1041bp) protein (347aa)
Glycosyl transferase Tax=Microvirga sp. WSM3557 RepID=I4YY99_9RHIZ
succinoglycan biosynthesis protein exoA
Tax=BJP_IG2157_Anaerolineales_55_23
PLM4_32_coex_redo_sep16_scaffold_5374_13
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

12051..13211
DNA (1161bp) protein (387aa)
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XZM7_9FIRM
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
Tax=CG_Arma_02
PLM4_32_coex_redo_sep16_scaffold_5374_14
unknown

Not on your lists

comp(13208..13543)
DNA (336bp) protein (112aa)

This feature has no annotations

Displaying 17 items

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