ggKbase home page

PLM4_32_coex_redo_sep16_scaffold_6172

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_6172_1
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3..1925)
DNA (1923bp) protein (641aa)
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent bin=GWA2_Ignavibacteria_55_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_32_coex_redo_sep16_scaffold_6172_2
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2072..2416)
DNA (345bp) protein (115aa)
Type IV pilus assembly PilZ bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PilZ domain-containing protein
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_32_coex_redo_sep16_scaffold_6172_3
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2419..3474)
DNA (1056bp) protein (352aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HE37_ANADF
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_32_coex_redo_sep16_scaffold_6172_4
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3453..4226)
DNA (774bp) protein (258aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
RNA methyltransferase Tax=Pseudomonas pyrrocinia RepID=UPI00037B43D9
RNA methyltransferase
PLM4_32_coex_redo_sep16_scaffold_6172_5
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4236..6131
DNA (1896bp) protein (632aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_32_coex_redo_sep16_scaffold_6172_6
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

Not on your lists

comp(6043..6816)
DNA (774bp) protein (258aa)
Uncharacterized protein bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
RmuC-domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
PLM4_32_coex_redo_sep16_scaffold_6172_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7063..8307
DNA (1245bp) protein (415aa)
Efflux transporter, RND family, MFP subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAR2_GEOUR
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABQ25334.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_32_coex_redo_sep16_scaffold_6172_8
GWC2_OP9X_49_35_curated, OP9X, Bacteria

Not on your lists

8304..9017
DNA (714bp) protein (238aa)
ABC transporter, ATP-binding protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EDL8_GEOBB
ABC transporter ATP-binding protein
Tax=GWC2_OP9X_49_35_curated
PLM4_32_coex_redo_sep16_scaffold_6172_9
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

9014..10243
DNA (1230bp) protein (410aa)
ABC transporter, membrane protein Tax=Geobacter sulfurreducens RepID=D7AF50_GEOSK
ABC transporter membrane protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_coex_redo_sep16_scaffold_6172_10
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10267..11517
DNA (1251bp) protein (417aa)
M20 (Carboxypeptidase Ss1) subfamily protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08SD2_STIAD
Peptidase M20 {ECO:0000313|EMBL:KFA90129.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
M20 (Carboxypeptidase Ss1) subfamily protein
PLM4_32_coex_redo_sep16_scaffold_6172_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11514..12158)
DNA (645bp) protein (215aa)
pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SEC4_RHOMR
PLM4_32_coex_redo_sep16_scaffold_6172_12
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12182..13660
DNA (1479bp) protein (493aa)
Ser/Thr kinase family protein (EC:2.7.1.-)
Peptidase C14, caspase catalytic subunit p20 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5L8_9DELT
Peptidase C14, caspase catalytic subunit p20 {ECO:0000313|EMBL:EDM78799.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
Displaying 12 items

View Taxonomy