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PLM4_32_coex_redo_sep16_scaffold_500

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_500_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

1..2811
DNA (2811bp) protein (937aa)
Serine/threonine protein kinase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIB0_KORVE
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_coex_redo_sep16_scaffold_500_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

2835..3647
DNA (813bp) protein (271aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QR9_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ88001.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_32_coex_redo_sep16_scaffold_500_3
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

3644..4612
DNA (969bp) protein (323aa)
Aldo/keto reductase family bin=GWC2_Ignavibacteria_56_12 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
Aldo/keto reductase
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_32_coex_redo_sep16_scaffold_500_4
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4640..6154
DNA (1515bp) protein (505aa)
Di-/tripeptide transporter Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X662_FLAB3
Di-/tripeptide transporter
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_32_coex_redo_sep16_scaffold_500_5
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

6228..6794
DNA (567bp) protein (189aa)
ECF subfamily RNA polymerase sigma-24 factor bin=RBG_16_Aminicenantes_63_16_plus tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_32_coex_redo_sep16_scaffold_500_6
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

6806..7576
DNA (771bp) protein (257aa)
Anti-ECFsigma factor, ChrR bin=GWC2_Ignavibacteria_56_12 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-ECFsigma factor ChrR
Tax=RBG_13_Aminicenantes_62_12_curated
PLM4_32_coex_redo_sep16_scaffold_500_7
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

7573..8430
DNA (858bp) protein (286aa)
hypothetical protein bin=RBG_16_Aminicenantes_63_16_plus tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_32_coex_redo_sep16_scaffold_500_8
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8436..9278
DNA (843bp) protein (281aa)
Uncharacterized protein Tax=Fibrisoma limi BUZ 3 RepID=I2GDE7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH51921.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_500_9
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9244..9636)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9P8N0_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX59496.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_500_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9708..10037)
DNA (330bp) protein (110aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000255|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000255|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PCD {ECO:0000255|HAMAP-Rule:MF_00434};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Putative pterin-4-alpha-carbinolamine dehydratase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PHS_NITMU
PLM4_32_coex_redo_sep16_scaffold_500_11
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10066..11157)
DNA (1092bp) protein (364aa)
Putative uncharacterized protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DF81_MYXXD
Uncharacterized protein {ECO:0000313|EMBL:KFE68100.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_500_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

11253..13130
DNA (1878bp) protein (626aa)
Acyl-CoA dehydrogenase domain protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JCC8_ANAD2
acyl-CoA dehydrogenase domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_500_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

13195..14910
DNA (1716bp) protein (572aa)
amidase (EC:3.5.1.4)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI000377A7C2
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_32_coex_redo_sep16_scaffold_500_14
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(14900..15838)
DNA (939bp) protein (313aa)
Homocysteine S-methyltransferase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4A8_CALAS
mmuM; homocysteine S-methyltransferase
Homocysteine S-methyltransferase {ECO:0000313|EMBL:BAM00096.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM4_32_coex_redo_sep16_scaffold_500_15
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15882..16787
DNA (906bp) protein (302aa)
Uncharacterized protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TYA7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ERK87488.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_500_16
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16886..17683
DNA (798bp) protein (266aa)
Uncharacterized protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VW42_9BACT
replication restart DNA helicase PriA
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_32_coex_redo_sep16_scaffold_500_17
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(17687..18280)
DNA (594bp) protein (198aa)
TonB-dependent outer membrane transport protein Tax=Melioribacter roseus (strain P3M) RepID=I7A2N1_MELRP
TonB-dependent outer membrane transport protein {ECO:0000313|EMBL:AFN75438.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
TonB-dependent receptor
PLM4_32_coex_redo_sep16_scaffold_500_18
Gallaecimonas xiamenensis, Gallaecimonas, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18306..19778)
DNA (1473bp) protein (491aa)
TonB-dependent receptor plug Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2IIB2_9GAMM
TonB-dependent receptor plug {ECO:0000313|EMBL:EKE69866.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Gallaecimonas.;" source="Gallaecimonas xiamenensis 3-C-1.;"
TonB-dependent receptor
PLM4_32_coex_redo_sep16_scaffold_500_19
unknown

Not on your lists

comp(19857..20189)
DNA (333bp) protein (111aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_500_20
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

Not on your lists

20672..21916
DNA (1245bp) protein (415aa)
Uncharacterized protein Tax=planctomycete KSU-1 RepID=I3IQU6_9PLAN
hypothetical protein
Tax=GWB2_Planctomycetes_41_19_curated
PLM4_32_coex_redo_sep16_scaffold_500_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

21927..22796
DNA (870bp) protein (290aa)
Periplasmic solute binding protein Tax=Pedosphaera parvula Ellin514 PF5_9BACT">RepID=B9XPF5_9BACT
Periplasmic solute binding protein {ECO:0000313|EMBL:EEF58295.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
periplasmic solute binding protein
PLM4_32_coex_redo_sep16_scaffold_500_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22804..23682
DNA (879bp) protein (293aa)
ABC-3 protein Tax=Pedosphaera parvula Ellin514 PF4_9BACT">RepID=B9XPF4_9BACT
ABC-3 protein {ECO:0000313|EMBL:EEF58294.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC-3 protein
PLM4_32_coex_redo_sep16_scaffold_500_23
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23637..24911)
DNA (1275bp) protein (425aa)
hypothetical protein Tax=Caulobacter RepID=UPI00036728E5
Uncharacterized protein {ECO:0000313|EMBL:KFA92312.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_500_24
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

24947..26653
DNA (1707bp) protein (569aa)
AMP-dependent synthetase and ligase Tax=Oscillochloris trichoides DG-6 RepID=E1IHX9_9CHLR
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EFO79254.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
AMP-dependent synthetase and ligase
PLM4_32_coex_redo_sep16_scaffold_500_25
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

26650..27174
DNA (525bp) protein (175aa)
Lipoprotein signal peptidase bin=GWD2_Nitrospirae-related_57_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_32_coex_redo_sep16_scaffold_500_26

Not on your lists

27171..28115
DNA (945bp) protein (315aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037BD17B
Marine sediment metagenome DNA, contig: S01H1_L08664 {ECO:0000313|EMBL:GAF94121.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_500_27
unknown

Not on your lists

28112..29269
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIZ1_CHIPD
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_500_28
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29320..30606
DNA (1287bp) protein (429aa)
Class I aminotransferase Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C7F9_MYXFH
class I aminotransferase
Class I aminotransferase {ECO:0000313|EMBL:AEI63157.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM4_32_coex_redo_sep16_scaffold_500_29
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30610..31659
DNA (1050bp) protein (350aa)
hypothetical protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625765
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM4_32_coex_redo_sep16_scaffold_500_30
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(31656..31952)
DNA (297bp) protein (99aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MJZ9_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV22641.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
Displaying items 1-30 of 39 in total

View Taxonomy