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PLM4_32_coex_redo_sep16_scaffold_506

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_506_1
unknown

Not on your lists

3..125
DNA (123bp) protein (41aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_506_2
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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140..700
DNA (561bp) protein (187aa)
Outer membrane chaperone Skp (OmpH) Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV48_KORVE
outer membrane chaperone Skp
Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
PLM4_32_coex_redo_sep16_scaffold_506_3
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

700..1743
DNA (1044bp) protein (348aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
UDP-3-O-acylglucosamine N-acyltransferase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UF41_MYXSD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
PLM4_32_coex_redo_sep16_scaffold_506_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

1746..2177
DNA (432bp) protein (144aa)
beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZM38_TERRK
PLM4_32_coex_redo_sep16_scaffold_506_5
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2183..2965
DNA (783bp) protein (261aa)
acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus.;" source="Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1).;"
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Tax=Magnetococcus sp. (strain MC-1) RepID=A0L8R6_MAGSM
PLM4_32_coex_redo_sep16_scaffold_506_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

2962..3909
DNA (948bp) protein (316aa)
putative dehydrogenase-like protein bin=CNBR_ACIDO species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
NAD-dependent oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_32_coex_redo_sep16_scaffold_506_7
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

3906..4994
DNA (1089bp) protein (363aa)
Beta-lactamase class C and other penicillin binding proteins Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIP5_CHLTF
class C beta-lactamase
Beta-lactamase class C and other penicillin binding proteins {ECO:0000313|EMBL:AEP12263.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_32_coex_redo_sep16_scaffold_506_8
unknown

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5008..6036
DNA (1029bp) protein (343aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_506_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6043..7269
DNA (1227bp) protein (409aa)
Isopropylmalate/homocitrate/citramalate synthase {ECO:0000313|EMBL:CDM66977.1}; EC=2.3.3.13 {ECO:0000313|EMBL:CDM66977.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
2-isopropylmalate synthase Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-isopropylmalate synthase
PLM4_32_coex_redo_sep16_scaffold_506_10
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7300..8556
DNA (1257bp) protein (419aa)
ATP-dependent RNA helicase Tax=Micavibrio aeruginosavorus EPB RepID=M4VFJ1_9PROT
ATP-dependent RNA helicase
ATP-dependent RNA helicase {ECO:0000313|EMBL:AGH98137.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
PLM4_32_coex_redo_sep16_scaffold_506_11
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8570..9154
DNA (585bp) protein (195aa)
RNA methyltransferase, RsmD family Tax=Saccharomonospora marina XMU15 RepID=H5WZC5_9PSEU
RNA methyltransferase, RsmD family {ECO:0000313|EMBL:EHR49587.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
methyltransferase
PLM4_32_coex_redo_sep16_scaffold_506_12
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

9244..10356
DNA (1113bp) protein (371aa)
Peptidoglycan-binding lysin domain protein Tax=Holophaga foetida DSM 6591 RepID=H1NVQ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDA53329.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
peptidoglycan-binding LysM
PLM4_32_coex_redo_sep16_scaffold_506_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10362..11531)
DNA (1170bp) protein (390aa)
General secretory system II, protein E domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB09_GEOUR
general secretion pathway protein E
General secretory system II, protein E domain protein {ECO:0000313|EMBL:ABQ25243.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_32_coex_redo_sep16_scaffold_506_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11556..13769)
DNA (2214bp) protein (738aa)
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
polynucleotide phosphorylase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_32_coex_redo_sep16_scaffold_506_15
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


comp(13941..14210)
DNA (270bp) protein (90aa)
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 bin=CNBR_ACIDO species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsO; 30S ribosomal protein S15
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_32_coex_redo_sep16_scaffold_506_16

Not on your lists

comp(14275..15207)
DNA (933bp) protein (311aa)
tRNA pseudouridine synthase B Tax=Roseiflexus sp. (strain RS-1) RepID=A5UZQ6_ROSS1
Marine sediment metagenome DNA, contig: S01H1_S09635 {ECO:0000313|EMBL:GAG07552.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
tRNA pseudouridine synthase B
PLM4_32_coex_redo_sep16_scaffold_506_17
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15210..15587)
DNA (378bp) protein (126aa)
hypothetical protein Tax=Thioalkalivibrio sp. AKL17 RepID=UPI0003661F9E
rbfA_[H]; Ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
PLM4_32_coex_redo_sep16_scaffold_506_18
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(15584..15913)
DNA (330bp) protein (110aa)
YlxP Tax=Sulfurihydrogenibium RepID=C4FJV7_9AQUI
YlxP
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_32_coex_redo_sep16_scaffold_506_19
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(15943..18498)
DNA (2556bp) protein (852aa)
Translation initiation factor IF-2 Tax=Solibacter usitatus (strain Ellin6076) RepID=IF2_SOLUE
translation initiation factor 2
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM4_32_coex_redo_sep16_scaffold_506_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18518..19885)
DNA (1368bp) protein (456aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000378CEBC
nusA; transcription termination factor NusA
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_506_21
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(20037..20537)
DNA (501bp) protein (167aa)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI0003774E36
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_32_coex_redo_sep16_scaffold_506_22
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(20548..21546)
DNA (999bp) protein (333aa)
Tetratricopeptide TPR_2 repeat protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NFW7_ROSCS
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABU56348.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Displaying 22 items

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