ggKbase home page

PLM4_32_coex_redo_sep16_scaffold_672

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_672_1
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(2..706)
DNA (705bp) protein (235aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54147.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_32_coex_redo_sep16_scaffold_672_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

988..1575
DNA (588bp) protein (196aa)
Uncharacterized protein Tax=Thiothrix nivea DSM 5205 RepID=I3BY60_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDM65268.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cytochrome c
PLM4_32_coex_redo_sep16_scaffold_672_3
unknown

Not on your lists

comp(1609..1911)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_672_4
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2016..2462
DNA (447bp) protein (149aa)
DoxX family protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LX95_HALO1
DoxX family protein
DoxX family protein {ECO:0000313|EMBL:ACY16137.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_32_coex_redo_sep16_scaffold_672_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

2540..2956
DNA (417bp) protein (139aa)
Putative uncharacterized protein Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UPQ7_PSEUP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_coex_redo_sep16_scaffold_672_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

2946..4409
DNA (1464bp) protein (488aa)
membrane protein Tax=Arenimonas oryziterrae RepID=UPI0003B7A2F7
membrane-flanked domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_coex_redo_sep16_scaffold_672_7

Not on your lists

comp(4392..5699)
DNA (1308bp) protein (436aa)
thrC; threonine synthase (EC:4.2.3.1)
Uncharacterized protein {ECO:0000313|EMBL:KKM21165.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L-threonine synthase bin=GWF2_Lentisphaerae_38_69 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
PLM4_32_coex_redo_sep16_scaffold_672_8
bacterium UASB270, Bacteria

Not on your lists

comp(5696..6628)
DNA (933bp) protein (311aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; species="Bacteria.;" source="bacterium UASB270.;"
Predicted protein Tax=Physcomitrella patens subsp. patens RepID=A9T5Q1_PHYPA
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_672_9
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6630..9152)
DNA (2523bp) protein (841aa)
aspartokinase/homoserine dehydrogenase (EC:1.1.1.3 2.7.2.4)
Aspartokinase/homoserine dehydrogenase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A849_GEMAT
Tax=CG_Delta_07
PLM4_32_coex_redo_sep16_scaffold_672_10
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9164..12364)
DNA (3201bp) protein (1067aa)
Uncharacterized protein Tax=Beggiatoa alba B18LD RepID=I3CKU2_9GAMM
TPR repeat protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_32_coex_redo_sep16_scaffold_672_11
unknown

Not on your lists

comp(12373..12942)
DNA (570bp) protein (190aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_672_12
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12939..13541)
DNA (603bp) protein (201aa)
ECF subfamily RNA polymerase sigma-24 factor Tax=gamma proteobacterium BDW918 RepID=I2JGF5_9GAMM
RNA polymerase sigma factor CarQ {ECO:0000313|EMBL:GAO33746.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM4_32_coex_redo_sep16_scaffold_672_13
unknown

Not on your lists

13645..15495
DNA (1851bp) protein (617aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_672_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15440..16534
DNA (1095bp) protein (365aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000373E527
Putative two-component histidine kinase {ECO:0000313|EMBL:GAO42663.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_672_15
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16531..17196
DNA (666bp) protein (222aa)
LuxR family transcriptional regulator Tax=Hymenobacter norwichensis RepID=UPI0003B57AEE
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:AIZ63133.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
PLM4_32_coex_redo_sep16_scaffold_672_16
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17272..18243
DNA (972bp) protein (324aa)
Regulator of chromosome condensation Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CMD0_MYXFH
Uncharacterized protein {ECO:0000313|EMBL:AKF87338.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
regulator of chromosome condensation
PLM4_32_coex_redo_sep16_scaffold_672_17
unknown

Not on your lists

18288..18599
DNA (312bp) protein (104aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_672_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18610..19167
DNA (558bp) protein (186aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XY03_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP36790.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Displaying 18 items

View Taxonomy