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PLM4_32_coex_redo_sep16_scaffold_721

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_721_1
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..321)
DNA (321bp) protein (107aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta Tax=Plesiocystis pacifica SIR-1 RepID=A6GJK9_9DELT
PLM4_32_coex_redo_sep16_scaffold_721_2
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(346..1047)
DNA (702bp) protein (234aa)
Two component transcriptional regulator, winged helix family Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HF04_ANADF
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS27300.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM4_32_coex_redo_sep16_scaffold_721_3
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1044..3716)
DNA (2673bp) protein (891aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
osmosensitive K+ channel signal transduction histidine kinase (EC:2.7.3.-)
Osmosensitive K+ channel signal transduction histidine kinase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IPD8_ANADE
PLM4_32_coex_redo_sep16_scaffold_721_4
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3774..4418)
DNA (645bp) protein (215aa)
Ribonuclease HII Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=RNH2_ANADF
Ribonuclease HII {ECO:0000313|EMBL:AKF05161.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
rnhB; ribonuclease HII
PLM4_32_coex_redo_sep16_scaffold_721_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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4442..5191
DNA (750bp) protein (250aa)
phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000255|HAMAP-Rule:MF_01039}; Short=BPG-dependent PGAM {ECO:0000255|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000255|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000255|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000255|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000255|HAMAP-Rule:MF_01039};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Tax=Solibacter usitatus (strain Ellin6076) RepID=GPMA_SOLUE
PLM4_32_coex_redo_sep16_scaffold_721_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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5202..5462
DNA (261bp) protein (87aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A86_SOLUE
4Fe-4S ferredoxin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_coex_redo_sep16_scaffold_721_7
unknown

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5493..6470
DNA (978bp) protein (326aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_721_8
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6467..7258
DNA (792bp) protein (264aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL37365.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 bin=GWF1_Xanthomonadales_69_6 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
PLM4_32_coex_redo_sep16_scaffold_721_9
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7236..8495
DNA (1260bp) protein (420aa)
Tetratricopeptide TPR_2 repeat protein bin=GWA2_Deltaproteo_65_63 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
PLM4_32_coex_redo_sep16_scaffold_721_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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8667..9950
DNA (1284bp) protein (428aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000367F0FE
beta-ketoacyl synthase
Beta-ketoacyl synthase {ECO:0000313|EMBL:ABJ82904.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_32_coex_redo_sep16_scaffold_721_11
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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9950..10678
DNA (729bp) protein (243aa)
Methyltransferase type 11 Tax=Nitrospina gracilis 3/211 RepID=M1YKV5_9BACT
Methyltransferase type 11 {ECO:0000313|EMBL:CCQ91131.1}; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
type 11 methyltransferase
PLM4_32_coex_redo_sep16_scaffold_721_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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10675..11823
DNA (1149bp) protein (383aa)
Putative Electron transfer oxidoreductase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
FAD dependent oxidoreductase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_coex_redo_sep16_scaffold_721_13
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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11904..12551
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C5Q4_DESTA
Protein of unknown function (DUF3157)
Uncharacterized protein {ECO:0000313|EMBL:AFM24895.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
PLM4_32_coex_redo_sep16_scaffold_721_14
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12606..13637
DNA (1032bp) protein (344aa)
hypothetical protein Tax=Kaistia granuli RepID=UPI0003703957
Uncharacterized protein {ECO:0000313|EMBL:KDP88488.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_721_15
unknown

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13634..13954
DNA (321bp) protein (107aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_721_16
unknown

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14230..14556
DNA (327bp) protein (109aa)
large extracellular alpha-helical protein
PLM4_32_coex_redo_sep16_scaffold_721_17
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14540..14698)
DNA (159bp) protein (53aa)
Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46SJ5_CUPPJ
response regulator receiver ATP-binding protein
Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal {ECO:0000313|EMBL:AAZ63889.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
PLM4_32_coex_redo_sep16_scaffold_721_18
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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15090..15299
DNA (210bp) protein (70aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI00036B091E
KaiB domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
PLM4_32_coex_redo_sep16_scaffold_721_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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15406..17082
DNA (1677bp) protein (559aa)
PAS domain-containing protein Tax=Schlesneria paludicola RepID=UPI000299CF32
PAS/PAC sensor hybrid histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_coex_redo_sep16_scaffold_721_20
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17124..17831
DNA (708bp) protein (236aa)
Uncharacterized protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C7S4_MYXFH
Uncharacterized protein {ECO:0000313|EMBL:EYR67007.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_721_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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17850..18041
DNA (192bp) protein (64aa)
hypothetical protein Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00037AB46E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJP80753.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
PLM4_32_coex_redo_sep16_scaffold_721_22
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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18053..18376
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=Actinomyces sp. oral taxon 181 str. F0379 RepID=L1PJP2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ETK36313.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
YCII-related protein
PLM4_32_coex_redo_sep16_scaffold_721_23
unknown

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18453..18638
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying 23 items

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