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PLM4_32_coex_redo_sep16_scaffold_766

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_766_1
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2..1651
DNA (1650bp) protein (550aa)
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
Urocanate hydratase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LH96_HALO1
PLM4_32_coex_redo_sep16_scaffold_766_2
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1661..2221
DNA (561bp) protein (187aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
Superoxide dismutase [Cu-Zn] Tax=Flavobacterium sp. F52 RepID=J1ACL6_9FLAO
superoxide dismutase
PLM4_32_coex_redo_sep16_scaffold_766_3
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2244..3095)
DNA (852bp) protein (284aa)
Zinc finger/thioredoxin putative Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IN21_ANADE
Tetratricopeptide repeat protein {ECO:0000313|EMBL:KFE72354.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
zinc finger/thioredoxin
PLM4_32_coex_redo_sep16_scaffold_766_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(3257..3889)
DNA (633bp) protein (211aa)
DedA protein Tax=uncultured bacterium A1Q1_fos_962 RepID=L7VST4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_coex_redo_sep16_scaffold_766_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3893..5257)
DNA (1365bp) protein (455aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component sigma54 specific Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_32_coex_redo_sep16_scaffold_766_6
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5295..6830)
DNA (1536bp) protein (512aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
Sensor histidine kinase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UHE4_MYXSD
sensor histidine kinase
PLM4_32_coex_redo_sep16_scaffold_766_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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6983..8122
DNA (1140bp) protein (380aa)
protease Do (EC:3.4.21.107); K01362 [EC:3.4.21.-] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
PDZ/DHR/GLGF domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_coex_redo_sep16_scaffold_766_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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8190..9392
DNA (1203bp) protein (401aa)
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1)
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_32_coex_redo_sep16_scaffold_766_9
R_NC10_66_22, NC10, Bacteria

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9389..11758
DNA (2370bp) protein (790aa)
putative transketolase (EC:2.2.1.1)
Putative transketolase bin=GWB2_Chloroflexi_49_20 species=Sphaerochaeta globosa genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_coex_redo_sep16_scaffold_766_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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11755..12807
DNA (1053bp) protein (351aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PIB7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43004.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM4_32_coex_redo_sep16_scaffold_766_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(12804..13685)
DNA (882bp) protein (294aa)
peptidase M23 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M23B
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_32_coex_redo_sep16_scaffold_766_12
unknown

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13702..14244
DNA (543bp) protein (181aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_766_13
unknown

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14251..14526
DNA (276bp) protein (92aa)
Thioredoxin domain-containing protein bin=GWE2_Bacteroidetes_40_15 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
PLM4_32_coex_redo_sep16_scaffold_766_14
S_OP1_64_32, KB1, Bacteria

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14578..15651
DNA (1074bp) protein (358aa)
Aminotransferase class V Tax=uncultured prokaryote RepID=H5SIQ3_9ZZZZ
class V aminotransferase
Tax=S_OP1_64_32
PLM4_32_coex_redo_sep16_scaffold_766_15
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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15648..16568
DNA (921bp) protein (307aa)
D-3-phosphoglycerate dehydrogenase Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J5H5_PSEUL
D-3-phosphoglycerate dehydrogenase
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:BAK77320.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
PLM4_32_coex_redo_sep16_scaffold_766_16
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

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16569..17693
DNA (1125bp) protein (375aa)
type 2 DNA topoisomerase 6 subunit A (EC:5.99.1.3); K03166 DNA topoisomerase VI subunit A [EC:5.99.1.3] bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
top6A; DNA topoisomerase VI subunit A (EC:5.99.1.3)
Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
PLM4_32_coex_redo_sep16_scaffold_766_17
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17695..18099)
DNA (405bp) protein (135aa)
UPF0301 protein COCOR_02043 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MHP3_CORCM
hypothetical protein
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
Displaying 17 items

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