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PLM4_32_coex_redo_sep16_scaffold_862

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_862_1
unknown

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comp(1..1530)
DNA (1530bp) protein (510aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_862_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(1527..2717)
DNA (1191bp) protein (397aa)
SAM-dependent methyltransferase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXR5_RUBXD
SAM-dependent methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_coex_redo_sep16_scaffold_862_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2736..3470)
DNA (735bp) protein (245aa)
Transcriptional regulator, TraR/DksA family Tax=Chthoniobacter flavus Ellin428 RepID=B4D0A5_9BACT
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:EDY20419.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
TraR/DksA family transcriptional regulator
PLM4_32_coex_redo_sep16_scaffold_862_4
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(3553..6297)
DNA (2745bp) protein (915aa)
Pyruvate phosphate dikinase {ECO:0000313|EMBL:KDA54312.1}; EC=2.7.9.1 {ECO:0000313|EMBL:KDA54312.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase Tax=Holophaga foetida DSM 6591 RepID=H1NYL6_9BACT
PLM4_32_coex_redo_sep16_scaffold_862_5
Halomonas sp. PBN3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6307..8394)
DNA (2088bp) protein (696aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. PBN3.;"
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycyl-tRNA synthetase Tax=Halomonas sp. PBN3 RepID=U7P7I6_9GAMM
PLM4_32_coex_redo_sep16_scaffold_862_6
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8391..9239)
DNA (849bp) protein (283aa)
glycyl-tRNA synthetase alpha chain (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
Glycine--tRNA ligase alpha subunit Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CAN6_DESTA
PLM4_32_coex_redo_sep16_scaffold_862_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9236..9970)
DNA (735bp) protein (245aa)
DNA repair protein RecO Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UYB9_TERSS
DNA repair protein RecO
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_862_8
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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10203..11387
DNA (1185bp) protein (395aa)
Cartilage oligomeric matrix protein Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2JLQ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKE52871.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_862_9

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comp(11384..12268)
DNA (885bp) protein (295aa)
GTP-binding protein Era; K03595 GTP-binding protein Era bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
era; GTP-binding protein Era
PLM4_32_coex_redo_sep16_scaffold_862_10

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comp(12265..13527)
DNA (1263bp) protein (421aa)
CBS domain containing protein Tax=uncultured Acidobacteria bacterium RepID=H5SIW6_9BACT
Marine sediment metagenome DNA, contig: S01H1_L07900 {ECO:0000313|EMBL:GAF78677.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_862_11
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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comp(13524..13967)
DNA (444bp) protein (148aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
Endoribonuclease YbeY Tax=uncultured Acidobacteria bacterium RepID=H5SIW5_9BACT
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_862_12
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13969..16206)
DNA (2238bp) protein (746aa)
Metal dependent phosphohydrolase Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K124_DESAC
phosphohydrolase
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM4_32_coex_redo_sep16_scaffold_862_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(16203..17204)
DNA (1002bp) protein (334aa)
PhoH family protein bin=GWB2_Proteobacteria_55_19 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
PhoH family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Displaying 13 items

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