ggKbase home page

PLM4_32_coex_redo_sep16_scaffold_4782

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_4782_1
unknown

Not on your lists

2..220
DNA (219bp) protein (73aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_4782_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

233..1639
DNA (1407bp) protein (469aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase bin=GWF2_Lentisphaerae_57_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_32_coex_redo_sep16_scaffold_4782_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

1679..2242
DNA (564bp) protein (188aa)
Putative RNA polymerase sigma factor Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JTH4_SACES
sigT; putative RNA polymerase sigma factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_coex_redo_sep16_scaffold_4782_4
unknown

Not on your lists

2239..2808
DNA (570bp) protein (190aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_4782_5
unknown

Not on your lists

2805..3290
DNA (486bp) protein (162aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_4782_6
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3277..3639
DNA (363bp) protein (121aa)
UPF0102 protein B193_2317 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GPS6_9DELT
hypothetical protein
UPF0102 protein B193_2317 {ECO:0000256|HAMAP-Rule:MF_00048}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
PLM4_32_coex_redo_sep16_scaffold_4782_trna_1
unknown

Not on your lists

3679..3751
DNA (73bp)
transferRNA Gly
PLM4_32_coex_redo_sep16_scaffold_4782_7
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

3694..4344
DNA (651bp) protein (217aa)
thiol-disulfide oxidoreductase Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B637BF
alkyl hydroperoxide reductase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM4_32_coex_redo_sep16_scaffold_4782_8
GWC2_OD1_53_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4357..5262)
DNA (906bp) protein (302aa)
lipoate synthase (EC:2.8.1.8)
Lipoyl synthase bin=GWA2_Ignavibacteria_55_11 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Lipoyl synthase {ECO:0000313|EMBL:KKW36084.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_53_7.;"
PLM4_32_coex_redo_sep16_scaffold_4782_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5259..5951)
DNA (693bp) protein (231aa)
lipoate-protein ligase B (EC:2.3.1.181)
hypothetical protein Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B3E9B7
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_coex_redo_sep16_scaffold_4782_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(5948..7228)
DNA (1281bp) protein (427aa)
2-oxoglutarate dehydrogenase E2 component {ECO:0000313|EMBL:ABF43350.1}; EC=2.3.1.61 {ECO:0000313|EMBL:ABF43350.1};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
2-oxoglutarate dehydrogenase E2 component Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIF0_KORVE
2-oxoglutarate dehydrogenase E2
PLM4_32_coex_redo_sep16_scaffold_4782_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(7241..7672)
DNA (432bp) protein (144aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] bin=CNBR_ACIDO species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Displaying 12 items

View Taxonomy