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PLM4_32_coex_redo_sep16_scaffold_1874

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_coex_redo_sep16_scaffold_1874_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3..506
DNA (504bp) protein (168aa)
protease Do bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PepD-like putative serine protease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_coex_redo_sep16_scaffold_1874_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(538..1218)
DNA (681bp) protein (227aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000375784F
two component transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_coex_redo_sep16_scaffold_1874_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(1218..2822)
DNA (1605bp) protein (535aa)
OmpR family signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
OmpR family signal transduction histidine kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_1874_4
unknown

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2934..3401
DNA (468bp) protein (156aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_1874_5
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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comp(3388..6537)
DNA (3150bp) protein (1050aa)
Heavy metal efflux pump, CzcA family bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
cation efflux system protein CusA
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_32_coex_redo_sep16_scaffold_1874_6
RLO_RIF05_58_11, RIF5, Bacteria

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comp(6534..7757)
DNA (1224bp) protein (408aa)
Efflux transporter, RND family, MFP subunit Tax=Holophaga foetida DSM 6591 RepID=H1P089_9BACT
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM4_32_coex_redo_sep16_scaffold_1874_7
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7754..9004)
DNA (1251bp) protein (417aa)
Outer membrane efflux protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HI94_ANADF
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ABS28440.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM4_32_coex_redo_sep16_scaffold_1874_8
unknown

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comp(9079..9456)
DNA (378bp) protein (126aa)

This feature has no annotations

PLM4_32_coex_redo_sep16_scaffold_1874_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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9709..10494
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RZD9_THEPD
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_coex_redo_sep16_scaffold_1874_10

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comp(10564..11697)
DNA (1134bp) protein (378aa)
Transposase Tax=sediment metagenome RepID=D9PLF3_9ZZZZ
Transposase {ECO:0000313|EMBL:EFK95612.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
PLM4_32_coex_redo_sep16_scaffold_1874_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(11841..13292)
DNA (1452bp) protein (484aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:CDM66539.1}; EC=1.1.1.42 {ECO:0000313|EMBL:CDM66539.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Isocitrate dehydrogenase Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CYB3_TRURR
isocitrate dehydrogenase
PLM4_32_coex_redo_sep16_scaffold_1874_12
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

13353..13868
DNA (516bp) protein (172aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NMP0_MARHT
PLM4_32_coex_redo_sep16_scaffold_1874_13
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

13865..14974
DNA (1110bp) protein (370aa)
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
Phosphoribosylaminoimidazole carboxylase, ATPase subunit Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NMN9_MARHT
PLM4_32_coex_redo_sep16_scaffold_1874_14
Anoxybacillus flavithermus, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14971..16128
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Anoxybacillus sp. SK3-4 RepID=T0CNA6_9BACI
Uncharacterized protein {ECO:0000313|EMBL:EMT46142.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus flavithermus AK1.;"
hypothetical protein
PLM4_32_coex_redo_sep16_scaffold_1874_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

16125..17102
DNA (978bp) protein (326aa)
peptidase M23B bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M23
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 15 items

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