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PLM4_5_b1_sep16_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_34_1
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..618)
DNA (618bp) protein (206aa)
ubiA; 4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-)
4-hydroxybenzoate polyprenyltransferase Tax=Methyloversatilis universalis RepID=UPI0003756AD4
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_34_2
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(621..2627)
DNA (2007bp) protein (669aa)
ATP-dependent DNA helicase RecG Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QND6_AZOSU
ATP-dependent DNA helicase RecG
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_34_3
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2624..3001)
DNA (378bp) protein (126aa)
Probable translational inhibitor protein Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D8Y5_LARHH
translational inhibitor protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_34_4
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3021..3374
DNA (354bp) protein (118aa)
Putative transcriptional regulator Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QND8_AZOSU
putative transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_34_5
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3371..5338
DNA (1968bp) protein (656aa)
amino acid transporter Tax=Janthinobacterium sp. CG3 RepID=UPI0003467366
amino acid permease family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_34_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5363..8755)
DNA (3393bp) protein (1131aa)
Sensory box/GGDEF family protein Tax=Nitrosospira sp. APG3 RepID=M5DEZ4_9PROT
response regulator receiver/GGDEF/PAS/PAC domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_34_7
unknown

Not on your lists

comp(8745..9086)
DNA (342bp) protein (114aa)
Two-component system response regulator Tax=Saccharopolyspora erythraea RepID=A4FGK8_SACEN
two-component response regulator
PLM4_5_b1_sep16_scaffold_34_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9172..9822)
DNA (651bp) protein (217aa)
Two component transcriptional regulator, LuxR family Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ0_9BACT
LuxR family two component response regulator protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_34_9
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9823..11292)
DNA (1470bp) protein (490aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
histidine kinase Tax=Herbaspirillum seropedicae RepID=UPI000308FAF2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_34_trna_2
unknown

Not on your lists

comp(11366..11438)
DNA (73bp)
transferRNA Ala
PLM4_5_b1_sep16_scaffold_34_10
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11553..12287
DNA (735bp) protein (245aa)
SapC family protein Tax=Burkholderia pseudomallei RepID=S5P1N1_BURPE
sapC family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_34_11
unknown

Not on your lists

comp(12284..12682)
DNA (399bp) protein (133aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_34_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12770..13549)
DNA (780bp) protein (260aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=Polaromonas sp. CF318 RepID=J2TI72_9BURK
response regulator receiver domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_34_13
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13612..14685)
DNA (1074bp) protein (358aa)
Putative Methyltransferase {ECO:0000313|EMBL:CAN91324.1}; EC=2.1.1.- {ECO:0000313|EMBL:CAN91324.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
O-methyltransferase Tax=Sorangium cellulosum So0157-2 RepID=S4XPW2_SORCE
O-methyltransferase
PLM4_5_b1_sep16_scaffold_34_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14728..15453)
DNA (726bp) protein (242aa)
Transcriptional regulator-like protein Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GN68_CUPNN
transcriptional regulator-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_34_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15481..15819)
DNA (339bp) protein (113aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_5_b1_sep16_scaffold_34_16
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16432..17061
DNA (630bp) protein (210aa)
200 kDa antigen p200 (Fragment) Tax=Babesia bigemina RepID=Q9NDI0_BABBI
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_5_b1_sep16_scaffold_34_trna_1
unknown

Not on your lists

comp(17122..17195)
DNA (74bp)
transferRNA Met
PLM4_5_b1_sep16_scaffold_34_17
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17235..19454)
DNA (2220bp) protein (740aa)
RNA polymerase sigma factor RpoD Tax=Rhodocyclaceae RepID=UPI00036BCC9A
rpoD; RNA polymerase sigma factor rpoD, Sigma-70
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_34_18
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19524..21269)
DNA (1746bp) protein (582aa)
DNA primase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CMJ8_SIDLE
DNA primase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_34_19
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21283..21729)
DNA (447bp) protein (149aa)
Putative uncharacterized protein bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_34_20
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21801..22013)
DNA (213bp) protein (71aa)
30S ribosomal protein S21 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RKY8_ACCPU
rpsU; 30S ribosomal protein S21
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_34_21
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22062..23078
DNA (1017bp) protein (339aa)
putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Herbaspirillum sp. CF444 RepID=J2LKB4_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_34_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23038..23658)
DNA (621bp) protein (207aa)
Glycerol-3-phosphate acyltransferase Tax=Burkholderia ambifaria MEX-5 RepID=B1TFQ0_9BURK
plsY; acyl-phosphate glycerol 3-phosphate acyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_34_23
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23699..24049
DNA (351bp) protein (117aa)
Dihydroneopterin aldolase Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SIX3_GALCS
dihydroneopterin aldolase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_34_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24046..25518)
DNA (1473bp) protein (491aa)
Tricarballylate dehydrogenase Tax=Oceanibaculum indicum P24 RepID=K2K4Q1_9PROT
tricarballylate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_34_25
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25515..26999)
DNA (1485bp) protein (495aa)
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein Tax=Hydrogenophaga sp. PBC RepID=I4MUY0_9BURK
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
PLM4_5_b1_sep16_scaffold_34_26
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26987..28771)
DNA (1785bp) protein (595aa)
Acetolactate synthase large subunit Tax=Bradyrhizobium sp. STM 3843 RepID=H0TD59_9BRAD
Acetolactate synthase large subunit {ECO:0000313|EMBL:CCE04397.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
thiamine pyrophosphate protein central region
PLM4_5_b1_sep16_scaffold_34_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28797..30224)
DNA (1428bp) protein (476aa)
Succinate-semialdehyde dehydrogenase Tax=Hydrogenophaga sp. PBC RepID=I4MUX4_9BURK
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EIK93014.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
succinate-semialdehyde dehydrogenase
PLM4_5_b1_sep16_scaffold_34_28
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30215..32752)
DNA (2538bp) protein (846aa)
ABC transporter related protein Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J3D0_POLGS
ABC transporter
Tax=GWA2_Curvibacter_64_110_curated
Displaying items 1-30 of 81 in total

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