ggKbase home page

PLM4_5_b1_sep16_scaffold_474

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_474_1
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1355
DNA (1353bp) protein (451aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein (EC:1.2.7.1)
Putative oxidoreductase, Fe-S subunit Tax=Rhodovulum sp. PH10 RepID=J6UI83_9RHOB
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_5_b1_sep16_scaffold_474_2
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1363..2355)
DNA (993bp) protein (331aa)
Uncharacterized protein Tax=Cupriavidus basilensis OR16 RepID=H1SGI5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EHP38378.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_474_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2426..3394
DNA (969bp) protein (323aa)
hypothetical protein Tax=Limnohabitans sp. Rim28 RepID=UPI0002F8D9B3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_474_4
CG_Mariprof_04, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3445..5505)
DNA (2061bp) protein (687aa)
Uncharacterized protein Tax=Thioflavicoccus mobilis 8321 RepID=L0GWT2_9GAMM
hypothetical protein
Tax=CG_Mariprof_04
PLM4_5_b1_sep16_scaffold_474_5
Pseudomonas sp. 2(2015), Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5653..7470
DNA (1818bp) protein (606aa)
hypothetical protein Tax=Rhizobium meliloti RepID=UPI00035EC8B2
Uncharacterized protein {ECO:0000313|EMBL:KJK18832.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 2(2015).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_474_6
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7473..8765
DNA (1293bp) protein (431aa)
Uncharacterized protein Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z772_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO90218.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_474_7
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8799..9497)
DNA (699bp) protein (233aa)
hypothetical protein Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036891CF
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_5_b1_sep16_scaffold_474_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9512..9934)
DNA (423bp) protein (141aa)
Amino acid-binding ACT bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amino acid-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_5_b1_sep16_scaffold_474_9
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9994..10305)
DNA (312bp) protein (104aa)
hypothetical protein Tax=Methyloversatilis sp. NVD RepID=UPI00036EA7F3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_474_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10333..11694
DNA (1362bp) protein (454aa)
Uncharacterized protein Tax=Nitrosospira sp. APG3 RepID=M5DHS8_9PROT
amidohydrolase 2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_474_11
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11716..12009)
DNA (294bp) protein (98aa)
id=3922729 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM4_5_b1_sep16_scaffold_474_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12121..12504
DNA (384bp) protein (128aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI000377F7C7
cysteine transferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_474_13
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12515..13537
DNA (1023bp) protein (341aa)
ATPase associated with various cellular activities AAA_3 Tax=Allochromatium vinosum RepID=D3RUG9_ALLVD
ATPase AAA {ECO:0000313|EMBL:GAN45364.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ATPase
PLM4_5_b1_sep16_scaffold_474_14
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13534..14436
DNA (903bp) protein (301aa)
Putative uncharacterized protein Tax=Thiorhodococcus drewsii AZ1 RepID=G2DWM0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EXJ15351.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_474_15
Marinobacter sp. ES-1, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14433..14900
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Marinobacter sp. ES-1 RepID=U7G7K1_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ERP93472.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ES-1.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_474_16
Marichromatium purpuratum, Marichromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14900..15850
DNA (951bp) protein (317aa)
von Willebrand factor type A Tax=Marichromatium purpuratum 984 RepID=F9U4K1_MARPU
von Willebrand factor A
von Willebrand factor A {ECO:0000313|EMBL:AHF04129.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Marichromatium.;" source="Marichromatium purpuratum 984.;"
PLM4_5_b1_sep16_scaffold_474_17
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15847..17526
DNA (1680bp) protein (560aa)
hypothetical protein Tax=Methylococcus capsulatus RepID=UPI00030BD204
hypothetical protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:AFL72912.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
PLM4_5_b1_sep16_scaffold_474_18
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17523..18761
DNA (1239bp) protein (413aa)
Uncharacterized protein Tax=Pseudomonas sp. G5(2012) RepID=S2FG71_9PSED
hypothetical protein
Protein BatD {ECO:0000313|EMBL:AHD13607.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
PLM4_5_b1_sep16_scaffold_474_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18758..20443)
DNA (1686bp) protein (562aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PE32_9BACT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_5_b1_sep16_scaffold_474_20
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20486..22105)
DNA (1620bp) protein (540aa)
heme ABC transporter ATP-binding protein Tax=Herbaspirillum sp. JC206 RepID=UPI000317D1A6
uup; ABC transporter ATPase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_474_21
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(22218..22583)
DNA (366bp) protein (122aa)
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM4_5_b1_sep16_scaffold_474_22
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22580..22807)
DNA (228bp) protein (76aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4EL85_9CHLR
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_474_23
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22885..23052)
DNA (168bp) protein (56aa)
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_474_24
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23152..23253)
DNA (102bp) protein (34aa)
C-type lectin-like Tax=Methylomonas sp. MK1 RepID=UPI00037771ED
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_5_b1_sep16_scaffold_474_25
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23271..23786)
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Bradyrhizobium sp. ORS 285 RepID=H0S634_9BRAD
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_5_b1_sep16_scaffold_474_26
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24094..25170
DNA (1077bp) protein (359aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6PJE5_9ZZZZ
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM4_5_b1_sep16_scaffold_474_27
bacterium YEK0313, Bacteria

Not on your lists

comp(25189..25545)
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Bradyrhizobium sp. S23321 RepID=I0GGJ6_9BRAD
Glyoxalase-like domain protein {ECO:0000313|EMBL:CEJ15699.1}; species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_474_28
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25627..26661)
DNA (1035bp) protein (345aa)
Putative RNA polymerase sigma factor containing a TPR repeat domain Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KFN0_MESAW
putative RNA polymerase sigma factor containing a TPR repeat domain
Putative RNA polymerase sigma factor containing a TPR repeat domain {ECO:0000313|EMBL:AGB43315.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
PLM4_5_b1_sep16_scaffold_474_29
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26856..27203)
DNA (348bp) protein (116aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035C9990
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
PLM4_5_b1_sep16_scaffold_474_30
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27293..27817
DNA (525bp) protein (175aa)
hypothetical protein Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00037DF828
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Displaying items 1-30 of 34 in total

View Taxonomy