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PLM4_5_b1_sep16_scaffold_4645

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_4645_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3..452
DNA (450bp) protein (150aa)
ctaA; cytochrome oxidase assembly protein; K02259 cytochrome c oxidase assembly protein subunit 15 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Leptospira inadai genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaA; cytochrome oxidase assembly protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4645_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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449..1384
DNA (936bp) protein (312aa)
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
protoheme IX farnesyltransferase (Heme O synthase) (HemeB farnesyltransferase) (EC:2.5.1.-)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4645_3
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1470..2105
DNA (636bp) protein (212aa)
cytochrome c oxidase subunit II Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI00028A15D3
Cytochrome c subfamily, putative {ECO:0000313|EMBL:EDY83139.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
cytochrome c oxidase subunit II
PLM4_5_b1_sep16_scaffold_4645_4
unknown

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2123..2251
DNA (129bp) protein (43aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4645_5
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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2268..2990
DNA (723bp) protein (241aa)
cytochrome c oxidase, subunit II bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytochrome c oxidase, subunit II
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
PLM4_5_b1_sep16_scaffold_4645_6
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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3002..4720
DNA (1719bp) protein (573aa)
cytochrome c oxidase, subunit I (EC:1.9.3.1) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytochrome c oxidase, subunit I (EC:1.9.3.1)
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
PLM4_5_b1_sep16_scaffold_4645_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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4717..5295
DNA (579bp) protein (193aa)
Cytochrome c oxidase, subunit III bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Cytochrome c oxidase, subunit III
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_5_b1_sep16_scaffold_4645_8
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5307..5696
DNA (390bp) protein (130aa)
caa(3)-type oxidase subunit IV bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM4_5_b1_sep16_scaffold_4645_9
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5701..6144
DNA (444bp) protein (148aa)
Cytochrome c oxidase subunit III subfamily Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH84_9BACT
cytochrome C oxidase subunit III
Tax=RBG_16_Deltaproteobacteria_71_12_curated
Displaying 9 items

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