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PLM4_5_b1_sep16_scaffold_4647

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_4647_1
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..268)
DNA (267bp) protein (89aa)
surE; stationary phase survival protein SurE (EC:3.1.3.5)
5'-nucleotidase SurE bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_5_b1_sep16_scaffold_4647_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(268..984)
DNA (717bp) protein (239aa)
putative glycosyltransferase (EC:2.4.-.-) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Glycosyltransferase involved in cell wall biogenesis (EC:2.4.-.-)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4647_trna_2
unknown

Not on your lists

comp(1051..1124)
DNA (74bp)
transferRNA Pro
PLM4_5_b1_sep16_scaffold_4647_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1182..1565)
DNA (384bp) protein (128aa)
Uncharacterized HTH-type transcriptional regulator in himA 3'region (Modular protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFB2_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
MerR family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4647_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1634..2638)
DNA (1005bp) protein (335aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=GPDA_PELPB bin=16ft_combo_ws3_JS1 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4647_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2642..3274)
DNA (633bp) protein (211aa)
UPI00029B4603 related cluster Tax=unknown RepID=UPI00029B4603 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4647_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3282..4592)
DNA (1311bp) protein (437aa)
GTPase Der Tax=Lactobacillus RepID=DER_LACDA bin=16ft_combo_ws3_JS1 species=unknown genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ribosome-associated GTPase EngA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4647_trna_1
unknown

Not on your lists

comp(4696..4768)
DNA (73bp)
transferRNA Gly
PLM4_5_b1_sep16_scaffold_4647_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4800..5732)
DNA (933bp) protein (311aa)
tRNA isopentenyltransferase MiaA Tax=Brachybacterium squillarum M-6-3 RepID=UPI0002629A05 bin=16ft_combo_ws3_JS1 species=Brachybacterium squillarum genus=Brachybacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
tRNA delta(2)-isopentenylpyrophosphate transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_4647_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5737..6141)
DNA (405bp) protein (135aa)
DNA mismatch repair protein MutL Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A251_STAND bin=16ft_combo_ws3_JS1 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA mismatch repair protein MutL
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 10 items

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