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PLM4_5_b1_sep16_scaffold_1041

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1041_1
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(2..1726)
DNA (1725bp) protein (575aa)
ABC-1 domain protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZY7_OPITP
hypothetical protein
ABC-1 domain protein {ECO:0000313|EMBL:ACB77323.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM4_5_b1_sep16_scaffold_1041_2
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1898..3184)
DNA (1287bp) protein (429aa)
Major facilitator family transporter Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U6Q9_MYXSD
Major facilitator family transporter {ECO:0000313|EMBL:KFA89826.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
major facilitator family transporter
PLM4_5_b1_sep16_scaffold_1041_3
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3335..4258
DNA (924bp) protein (308aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI00035E9A58
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII50740.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
PLM4_5_b1_sep16_scaffold_1041_4
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4275..5318
DNA (1044bp) protein (348aa)
Sensor histidine kinase Tax=Microscilla marina ATCC 23134 RepID=A1ZDG0_9BACT
Sensor histidine kinase {ECO:0000313|EMBL:EAY31699.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
lytS3; sensor protein
PLM4_5_b1_sep16_scaffold_1041_5
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5315..6022
DNA (708bp) protein (236aa)
Two component transcriptional regulator, LytTR family protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U2B9_MYXSD
two component transcriptional regulator, LytTR family protein
Two component transcriptional regulator, LytTR family protein {ECO:0000313|EMBL:AGC41747.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM4_5_b1_sep16_scaffold_1041_6
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6024..8123)
DNA (2100bp) protein (700aa)
beta-lactamase-like protein with penicillin binding protein transpeptidase domain Tax=Pedobacter agri RepID=UPI000299FE44
Contig78, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75893.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
beta-lactamase-like protein with penicillin binding protein transpeptidase domain
PLM4_5_b1_sep16_scaffold_1041_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8194..9399)
DNA (1206bp) protein (402aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F773_9RHIZ
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:CCV07746.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
PLM4_5_b1_sep16_scaffold_1041_8
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9548..11230)
DNA (1683bp) protein (561aa)
LuxR family transcriptional regulator Tax=Mesorhizobium sp. LSHC420B00 RepID=V7F7H9_9RHIZ
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESX60177.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
LuxR family transcriptional regulator
PLM4_5_b1_sep16_scaffold_1041_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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11435..14116
DNA (2682bp) protein (894aa)
Transmembrane protein (Fibronectin III domain and GP5 C-terminal repeat) Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B1I7_TURPD
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_5_b1_sep16_scaffold_1041_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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14116..16107
DNA (1992bp) protein (664aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI21_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99624.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM4_5_b1_sep16_scaffold_1041_11
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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16536..17333
DNA (798bp) protein (266aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
membrane-associated phosphatase, PAP2_like_5 family
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_5_b1_sep16_scaffold_1041_12
Lactobacillus pentosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(17357..18181)
DNA (825bp) protein (275aa)
CAAX amino terminal protease family Tax=Lactobacillus pentosus KCA1 RepID=I9AJN4_LACPE
CAAX amino terminal protease family {ECO:0000313|EMBL:EIW13152.1}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus pentosus KCA1.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1041_13
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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18298..19344
DNA (1047bp) protein (349aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase Tax=Opitutaceae bacterium TAV1 RepID=I6B222_9BACT
Tax=RBG_16_Actinobacteria_64_13_curated
Displaying 13 items

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