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PLM4_5_b1_sep16_scaffold_1078

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1078_1
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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2..286
DNA (285bp) protein (95aa)
Ig domain-containing protein group 2 domain-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=BJP_IG2158_Zixibacteria_48_33
PLM4_5_b1_sep16_scaffold_1078_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(302..3139)
DNA (2838bp) protein (946aa)
Glycosyl hydrolase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022A7_SOLUE
glycosyl hydrolase
Glycosyl hydrolase {ECO:0000313|EMBL:ABJ84196.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_5_b1_sep16_scaffold_1078_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3387..4376
DNA (990bp) protein (330aa)
Aspartate carbamoyltransferase Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SNI0_PLAL2 bin=16ft_combo_ws3_JS1 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aspartate carbamoyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1078_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4373..5689
DNA (1317bp) protein (439aa)
dihydroorotase (EC:3.5.2.3)
Dihydroorotase Tax=Candidatus Nitrospira defluvii RepID=D8PG62_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1078_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5686..6888
DNA (1203bp) protein (401aa)
Carbamoyl-phosphate synthase small chain Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=CARA_PELCD bin=16ft_combo_ws3_JS1 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
carA; carbamoyl phosphate synthase small subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1078_6
unknown

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6905..7294
DNA (390bp) protein (130aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1078_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7294..10506
DNA (3213bp) protein (1071aa)
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain Tax=Geitlerinema sp. PCC 7407 RepID=K9SBA5_9CYAN bin=16ft_combo_ws3_JS1 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1078_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10503..12317
DNA (1815bp) protein (605aa)
Outer membrane assembly lipoprotein YfiO Tax=Rhodothermus marinus RepID=D0MIU6_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1078_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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12314..13201
DNA (888bp) protein (296aa)
pyrK; dihydroorotate dehydrogenase electron transfer subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RBA1_AMMDK bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1078_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13198..13719
DNA (522bp) protein (174aa)
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=PYRDB_GEOLS bin=16ft_combo_ws3_JS1 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 10 items

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