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PLM4_5_b1_sep16_scaffold_1332

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1332_1
unknown

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3..233
DNA (231bp) protein (77aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1332_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(313..1392)
DNA (1080bp) protein (360aa)
Putative uncharacterized protein Tax=sediment metagenome RepID=D9PJ09_9ZZZZ bin=16ft_combo_ws3_JS1 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1332_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1481..2935)
DNA (1455bp) protein (485aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1332_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2928..4658)
DNA (1731bp) protein (577aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1332_5
GWE2_Clostridiales_32_10_curated, Clostridiales, Bacteria

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4909..8154
DNA (3246bp) protein (1082aa)
RCC1 repeat-containing protein bin=GWE2_Clostridiales_32_10 species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
regulator of chromosome condensation-like protein
Tax=GWE2_Clostridiales_32_10_curated
PLM4_5_b1_sep16_scaffold_1332_6
RLO_PLX_64_10, Bacteria

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comp(8177..11074)
DNA (2898bp) protein (966aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteria_55_11 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_5_b1_sep16_scaffold_1332_7
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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11222..11731
DNA (510bp) protein (170aa)
hypothetical protein Tax=Hoeflea sp. 108 RepID=UPI000372F6BA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU36591.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM4_5_b1_sep16_scaffold_1332_8
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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11737..12681
DNA (945bp) protein (315aa)
ATP-dependent DNA ligase Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003613F6A
ATP-dependent DNA ligase
ATP-dependent DNA ligase {ECO:0000313|EMBL:AFL86693.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
PLM4_5_b1_sep16_scaffold_1332_9
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(12686..14059)
DNA (1374bp) protein (458aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037381E3
putative DNA primase
Putative DNA primase {ECO:0000313|EMBL:AFL90227.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
PLM4_5_b1_sep16_scaffold_1332_10
Camponotus floridanus, Camponotus, Hymenoptera, Neoptera, Arthropoda, Metazoa

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comp(14127..15335)
DNA (1209bp) protein (403aa)
Putative uncharacterized protein Tax=Camponotus floridanus RepID=E2ABN3_CAMFO
Putative uncharacterized protein {ECO:0000313|EMBL:EFN69135.1}; species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Formicidae; Formicinae; Camponotus.;" source="Camponotus floridanus (Florida carpenter ant).;"
PLM4_5_b1_sep16_scaffold_1332_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(15397..16479)
DNA (1083bp) protein (361aa)
hydrolase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1332_12
GWA1_OP11_43_11, Gottesmanbacteria, Microgenomates, Bacteria

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comp(16860..21002)
DNA (4143bp) protein (1381aa)
Glycosyl hydrolase 38 domain protein Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQ52_RUNSL
Glycosyl hydrolase 38 domain protein {ECO:0000313|EMBL:KKS85478.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA1_43_11.;"
glycoside hydrolase family protein
PLM4_5_b1_sep16_scaffold_1332_13
RIFOXYB2_FULL_Desulfobacula_45_6_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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21264..22283
DNA (1020bp) protein (340aa)
penicillin-binding protein 1B (EC:2.4.1.129)
penicillin-binding protein 1B Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037E9DF2
Tax=RIFOXYB2_FULL_Desulfobacula_45_6_curated
PLM4_5_b1_sep16_scaffold_1332_14
unknown

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22222..23370
DNA (1149bp) protein (383aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1332_15

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comp(23382..24662)
DNA (1281bp) protein (427aa)
Methanoculleus bourgensis MS2 complete genome Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LNG3_METBM
Uncharacterized protein {ECO:0000313|EMBL:KKN93638.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cell surface protein
Displaying 15 items

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