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PLM4_5_b1_sep16_scaffold_1335

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1335_1
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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3..1436
DNA (1434bp) protein (478aa)
Glycosyl transferase, family 28 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023U1_SOLUE
glycosyl transferase family protein
Glycosyl transferase, family 28 {ECO:0000313|EMBL:ABJ83749.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_5_b1_sep16_scaffold_1335_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1433..3127
DNA (1695bp) protein (565aa)
Peptidyl-prolyl cis-trans isomerase domain protein Tax=Desulfovibrio RepID=D9YAP1_9DELT bin=16ft_combo_ws3_JS1 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_3
unknown

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3154..3888
DNA (735bp) protein (245aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1335_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(3914..4723)
DNA (810bp) protein (270aa)
alginate biosynthesis regulatory protein
alginate biosynthesis regulatory protein; K02477 two-component system, LytT family, response regulator bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Alginate biosynthesis regulatory protein {ECO:0000313|EMBL:ABC45322.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain DSM 13855 / M31).;"
PLM4_5_b1_sep16_scaffold_1335_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4723..6840)
DNA (2118bp) protein (706aa)
id=5225659 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
histidine kinase internal region
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7169..8584
DNA (1416bp) protein (472aa)
id=5225660 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8655..9398
DNA (744bp) protein (248aa)
Cell division ATP-binding protein FtsE Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLW0_MOOTA
cell division ATP-binding protein FtsE
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9399..10259
DNA (861bp) protein (287aa)
Cell division protein FtsX Tax=Veillonellaceae RepID=L1MZU0_9FIRM bin=16ft_combo_ws3_JS1 species=unknown genus=unknown taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Cell division protein FtsX
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10256..11458
DNA (1203bp) protein (401aa)
Peptidase, M23/M37 family Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L3X0_9BACT bin=16ft_combo_ws3_JS1 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
M23B-like peptidase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11461..12660
DNA (1200bp) protein (400aa)
DNA polymerase III, delta prime subunit Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HD56_ANADF bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA polymerase III subunit delta'
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13035..13937
DNA (903bp) protein (301aa)
PSP1 domain-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Shuttleworthia satelles genus=Shuttleworthia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PSP1 domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_12
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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13934..14317
DNA (384bp) protein (128aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037FCA43
endoribonuclease L-PSP
Tax=RBG_16_Actinobacteria_70_17_curated
PLM4_5_b1_sep16_scaffold_1335_13
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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14314..15138
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Thiothrix nivea DSM 5205 RepID=I3BUV2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ35145.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1335_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(15151..15987)
DNA (837bp) protein (279aa)
ABC-type transport system involved in multi-copper enzyme maturation, permease component Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDN7_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(15987..16901)
DNA (915bp) protein (305aa)
ABC-type multidrug transport system, ATPase component Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHR1_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
multidrug ABC transporter ATPase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(16914..17903)
DNA (990bp) protein (330aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHR0_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(17900..18457)
DNA (558bp) protein (186aa)
RNA polymerase ECF-type sigma factor Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZV5_ANATU bin=16ft_combo_ws3_JS1 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RNA polymerase ECF-type sigma factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_18
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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18538..19449
DNA (912bp) protein (304aa)
Uncharacterized protein Tax=Nitratireductor aquibiodomus RA22 RepID=I5BVZ7_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE48176.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
PLM4_5_b1_sep16_scaffold_1335_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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19495..21225
DNA (1731bp) protein (577aa)
Methionine--tRNA ligase Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z4U2_DESAT bin=16ft_combo_ws3_JS1 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
methionyl-tRNA synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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21235..22026
DNA (792bp) protein (264aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TatD-related deoxyribonuclease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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22078..23148
DNA (1071bp) protein (357aa)
HEAT repeat-containing protein Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8M984_PSEPS bin=16ft_combo_ws3_JS1 species=Pseudomonas pseudoalcaligenes genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
PBS lyase HEAT domain-containing protein repeat-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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23177..24118
DNA (942bp) protein (314aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.48)
Ribosomal RNA small subunit methyltransferase A Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RA59_AMMDK bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(24115..24813)
DNA (699bp) protein (233aa)
id=5223346 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(24897..25604)
DNA (708bp) protein (236aa)
DNA-binding response regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
drrA; response regulator DrrA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(25625..26767)
DNA (1143bp) protein (381aa)
OmpR family signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
OmpR family signal transduction histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26716..27141)
DNA (426bp) protein (142aa)
OmpR family signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(27264..28121)
DNA (858bp) protein (286aa)
Phage tail fiber protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Lactobacillus coryniformis genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cell wall surface anchor family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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28376..29554
DNA (1179bp) protein (393aa)
hypothetical protein; K09798 hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1335_29
unknown

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comp(29568..30026)
DNA (459bp) protein (153aa)

This feature has no annotations

Displaying 29 items

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