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PLM4_5_b1_sep16_scaffold_1541

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1541_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..451)
DNA (450bp) protein (150aa)
Uncharacterized protein Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C7A7_DESTA
Uncharacterized protein {ECO:0000313|EMBL:KGI78951.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1541_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(647..1354)
DNA (708bp) protein (236aa)
Uncharacterized protein Tax=Rhodanobacter sp. 115 RepID=I4VL13_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
PLM4_5_b1_sep16_scaffold_1541_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1398..1649)
DNA (252bp) protein (84aa)
cafA; ribonuclease G (EC:3.1.-.-); K08301 ribonuclease G [EC:3.1.26.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1541_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1604..2896)
DNA (1293bp) protein (431aa)
cafA; ribonuclease G (EC:3.1.-.-); K08301 ribonuclease G [EC:3.1.26.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ribonuclease, Rne/Rng family
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1541_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2925..5618)
DNA (2694bp) protein (898aa)
radical SAM protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
radical SAM protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1541_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5836..6531
DNA (696bp) protein (232aa)
Succinate dehydrogenase cytochrome b558 subunit Tax=Bacteria RepID=DHSC_BACSU bin=16ft_combo_ws3_JS1 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1541_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

6531..8345
DNA (1815bp) protein (605aa)
succinate dehydrogenase or fumarate reductase, flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WUK9_BACT2 bin=16ft_combo_ws3_JS1 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1541_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8361..9113
DNA (753bp) protein (251aa)
succinate dehydrogenase subunit B (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
succinate dehydrogenase subunit B (EC:1.3.99.1)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1541_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9113..10018
DNA (906bp) protein (302aa)
Initiation factor 2B related Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXN8_ROSS1 bin=16ft_combo_ws3_JS1 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
initiation factor 2B-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1541_10
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10029..10262)
DNA (234bp) protein (78aa)
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6G7V0_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EDM78043.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
PLM4_5_b1_sep16_scaffold_1541_11
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10259..10849)
DNA (591bp) protein (197aa)
RNA polymerase sigma-70 factor Tax=Plesiocystis pacifica SIR-1 RepID=A6G7V1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EYF07814.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
PLM4_5_b1_sep16_scaffold_1541_12
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10839..12470)
DNA (1632bp) protein (544aa)
VIT-vWFA-RpoN multidomain protein Tax=uncultured delta proteobacterium DeepAnt-1F12 RepID=Q2I6M5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EYF07816.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
vault protein inter-alpha-trypsin subunit
Displaying 12 items

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