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PLM4_5_b1_sep16_scaffold_1980

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1980_1
Pseudoalteromonas ruthenica, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..452
DNA (450bp) protein (150aa)
hydrolase Tax=Pseudoalteromonas ruthenica RepID=UPI00034A94DB
Hydrolase {ECO:0000313|EMBL:KJY95584.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas ruthenica.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1980_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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535..1152
DNA (618bp) protein (206aa)
hypothetical protein bin=bin1_lowGC species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_5_b1_sep16_scaffold_1980_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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1335..2075
DNA (741bp) protein (247aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI00036A8742
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_5_b1_sep16_scaffold_1980_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(2123..2926)
DNA (804bp) protein (268aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003718DBC
beta-propeller repeat-containing to-pal system protein TolB
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_5_b1_sep16_scaffold_1980_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3110..5056
DNA (1947bp) protein (649aa)
Peptidase M56, BlaR1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AL8_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5067..5627)
DNA (561bp) protein (187aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS72_KORVE bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5808..6281
DNA (474bp) protein (158aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6284..7345
DNA (1062bp) protein (354aa)
Chorismate synthase Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QLY7_DESB2 bin=16ft_combo_ws3_JS1 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
chorismate synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7568..8581
DNA (1014bp) protein (338aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_10
unknown

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8585..9121
DNA (537bp) protein (179aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1980_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9090..10412)
DNA (1323bp) protein (441aa)
Putative uncharacterized protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NL56_ROSCS bin=16ft_combo_ws3_JS1 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_12
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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comp(10436..12139)
DNA (1704bp) protein (568aa)
Peptidase S8 and S53 subtilisin kexin sedolisin Tax=Chloroflexus RepID=A9WFF1_CHLAA bin=16ft_combo_ws3_JS1 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_Actinobacteria_64_13_curated
PLM4_5_b1_sep16_scaffold_1980_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14221..15015
DNA (795bp) protein (265aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HFL3_ANADF bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15039..17276)
DNA (2238bp) protein (746aa)
alias=16ft_combo_ws3_scaffold_8929_12 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase S8/S53 subtilisin kexin sedolisin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1980_trna_1
unknown

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17425..17497
DNA (73bp)
transferRNA Val
PLM4_5_b1_sep16_scaffold_1980_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17598..18695
DNA (1098bp) protein (366aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 16 items

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